UFO11551.5prime Sequence
1121 bp (1001 high quality bases) assembled on 2012-05-31
> UFO11551.5prime
CAGTCGACATGGCTGAAATGGAAGTAAAACAAAAACTATTGAACGCGATG
TGCACTTATGATGATAAACTCAAGATCTGGAGTGGTCGTGAAGCACCAAG
TTTATTTTCGCCAAACTTATCAATCGGAGAGATAATCTTTGGGGATATGG
TAAACAATCCGAAACTCATTGCCCAGATCTCGATCACGGAGGACATCGTA
CTCACCCGCGAAGATCTTCATATGAATGCGATGCGAGTGGCTAGTTATAT
GAGGAATATGGGCTTGGGGCAAACTGATATAGTGGGGGTCATGGGCAGAC
ACACGACTCACCAATCAGCTGTGGCATATGCATGCTTCTTCAACGGAACC
CCCTTACACGCCCTTCACAATGCCTACGAAGAGGCATGCATCGCCAAACT
TTTTGGAATCACAAAGCCCCGCTTGATCTTCTGCGATGGTGATGAGTATG
AAAAGGTTAAATCGGCCACCAAGGACCTCCAGGTAACGATAGTCACCATG
CGGAATCATCCGAGGGGATCAGTGAGGATCCAGGATGTTCTGACCACTCC
AGTGATGCAGAATTTCCAACCACTTCGTCTCAAAGATGGCATCGATCACA
CTCTGGCCATTCTCAGTTCTTCCGGCACCTCGGGATTTCCAAAGGCAGTT
ACCATCAGCAATAGTCACAAGATCATTGTGGACTACATGGCAATTAATAA
CTCCAATATTCAGTATACGTCGAGCACCCTGGACTGGTGCTCGGGTCTTT
CGATGGCCATAACCTCTGGCGTGTTCAGTACCACTAGTATTATAGCGGAC
TGTGACTTTGATCCTGGGCTTTTTTGTCGCGCCATTGGAAAGTATAGGAT
CTCGATGGTGCTTCTAAGTAGCTCCTACCTAGCCATATTTGCCACTGCCC
AGAGTTCGAATCGGCTGACCTGTCTTCATTAAATTACGTGATTTTTGGAG
GATCAGCTGTCTCTGAAGTCAGCGTAAAGTTCGCAGCCGTCTTAGCACGA
TGCCTAATTTTGCTACGGCTTACTGGACTCACAGTGCGGCAGCGTACTTA
ATTCGATGAAACCATTCATGGTTCTTGCATTAGCTAAAATCAGGTATTCG
CGACTGGTAGTCTAGACAAGT
UFO11551.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:03:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18586-RB | 1817 | CG18586-RB | 102..1168 | 9..1059 | 4905 | 98.1 | Plus |
| CG18586-RC | 2020 | CG18586-RC | 463..1362 | 176..1059 | 4070 | 97.8 | Plus |
| CG18586-RC | 2020 | CG18586-RC | 323..463 | 9..149 | 705 | 100 | Plus |
| CG5568-RA | 1911 | CG5568-RA | 148..767 | 59..678 | 505 | 72.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:03:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5873854..5874370 | 173..689 | 2585 | 100 | Plus |
| 3L | 28110227 | 3L | 5874422..5874734 | 689..996 | 1305 | 97.4 | Plus |
| 3L | 28110227 | 3L | 5873633..5873800 | 9..176 | 840 | 100 | Plus |
| 3L | 28110227 | 3L | 5871882..5872323 | 237..678 | 470 | 73.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:03:28 has no hits.
UFO11551.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-31 11:49:46 Download gff for
UFO11551.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18586-RB | 102..1143 | 9..1039 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:20 Download gff for
UFO11551.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18586-RB | 102..1143 | 9..1039 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:46:42 Download gff for
UFO11551.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18586-RB | 102..1143 | 9..1039 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:46:42 Download gff for
UFO11551.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5874422..5874788 | 689..1043 | 95 | -> | Plus |
| 3L | 5873633..5873800 | 9..176 | 100 | -> | Plus |
| 3L | 5873858..5874369 | 177..688 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:20 Download gff for
UFO11551.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5867522..5867888 | 689..1043 | 95 | -> | Plus |
| arm_3L | 5866733..5866900 | 9..176 | 100 | -> | Plus |
| arm_3L | 5866958..5867469 | 177..688 | 100 | -> | Plus |
