UFO11552.5prime Sequence
868 bp (866 high quality bases) assembled on 2012-05-31
> UFO11552.5prime
CAGTCGACATGCATTATCAAAACAATAATAATAATAATAATAATGTCATT
AATCTGAGATCCCCTGCAATTCCACACAGAATTTCCCCGGAATCCGTAGC
AACTACAAATTCTTCAAACATGGGCCTGAACATACCCATGTTGATAGCGA
GCAGCCAGACGCTGGACAGTTGGAATACGGCGGGTCAGTACTCGCCACCG
ATATCGGGATCCGGCGGCGGTGGATCCGAGCGAGGAGGAAGTGCTGGAGG
CGGCGGAGTGCCGCCACAGCAACTGCGAGTACCGCTGCCGATGAGCTATC
ATGGCGGAGCTGGTGGTGGAAGCAGCAGTAGTGATTTCCAGCAGAGTCCC
CTGAAGACCATGGACACCTCGGACAATGAGGATAATAACAATACCAAGGA
GGATGTGGCGGCGGCAGCGGCACTGGGACAACTGGCTGCCAAGGTCGAGC
TGCGATCGCCGGCGGGCGCAGGTCCTGGCGGTGGCGGTGGTTCGAGCAGT
AGGGAAGCCAATGATCCAACCAGCGATCCCATCAAGCCCGACCGCACTCT
AAGCGAAGCTGGCAGCAGTCCCATACCGAATACCAATATGCACGAGGCGC
ACAAGAATCACCTGCTAAAACAGTCCCGCCGGCGGAAGGTCAGTCACGCC
CGCGGCAGGCGCATGAGCAGCTGCATCACCATCCGCACACGCAACACCAC
CTGCAACAGCAGCAGCAACAACTGCAGCAGCAGCATCAGCAGTTGCAGCA
GCAACAACTGCAACAGCATCAGCAACAGCAGCAGCTGCATCACGGCCACG
AGGATTGGACATCAAGCAGAAGTTGGTGGACTAATTTCCATGGCCAGGCG
GCTGGCGGTGGTGGTGGT
UFO11552.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:03:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5953-RC | 2535 | CG5953-RC | 94..955 | 5..868 | 4180 | 99.2 | Plus |
| CG5953-RD | 4576 | CG5953-RD | 1208..1954 | 120..868 | 3620 | 99.2 | Plus |
| CG5953-RB | 3796 | CG5953-RB | 1470..2216 | 120..868 | 3620 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:03:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16510700..16511446 | 868..120 | 3520 | 99.2 | Minus |
| 2L | 23513712 | 2L | 16519970..16520084 | 119..5 | 560 | 99.1 | Minus |
| 2R | 25286936 | 2R | 13823840..13823954 | 787..674 | 210 | 80.9 | Minus |
| X | 23542271 | X | 21333282..21333375 | 783..690 | 185 | 79.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:03:32 has no hits.
UFO11552.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-31 11:49:46 Download gff for
UFO11552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5953-RC | 90..955 | 1..868 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:22 Download gff for
UFO11552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5953-RC | 90..955 | 1..868 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:46:43 Download gff for
UFO11552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5953-RC | 90..955 | 1..868 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:46:43 Download gff for
UFO11552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16510700..16511446 | 120..868 | 99 | <- | Minus |
| 2L | 16519970..16520087 | 1..119 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:22 Download gff for
UFO11552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16510700..16511446 | 120..868 | 99 | <- | Minus |
| arm_2L | 16519970..16520087 | 1..119 | 97 | | Minus |
