UFO11553.5prime Sequence
1080 bp (935 high quality bases) assembled on 2012-05-31
> UFO11553.5prime
CAGTCGACATGATTGGCAAGATGCAAACGAAGGTGTTTCTGCTGTGCCTG
GTACTTTCCTTGGGAACATTTCCGACCGCTCAGGGACAATCGGATGCCGG
GAACGATGAGGAGCAACCACTCCATTTGACCAACGACGCGTCTTTCTTTC
AGCCACATTTGCACGATCGACGACTGGGTCGCCAGTTGATCGAGGATCTC
GCCGAGAGCCAGAGCTCGGCCAGCAGTGTCAGCAGCGGCAGCAGTCAGTC
CGGCTCCGCCTACGAGGATGACGATGACGACGTCGAGGGTTCCAGTGAGT
ACTACGATAGCGACGAGGAACAGTCCGAGGGCAGCAACGAATCCCTGCCT
CGTTTGCTCTCCCAATCCACCTTTAATCGCATCTCTGAGACCTTGGGAGC
GCTCAACCATGTGGGGCACATGCTGGTGGACATAACTCGCGGTGGACAGG
ATCAGGCCAAAATGGAGGGGGCGGAGAAGAGTGAGGATACAAGCCAGGAC
AATAGTCAGTCGGGTGGATCGTCCAGCGCAACCGCAAGTGCTTCCAGCAC
CACCGAAGTGGTTCCCTCTTCCACATCCTCCCCACGAGGAAATTCCGAGC
AACTGCCAGGAGTCTCAGACAAACTTATGGATCCTCTACCGATTACACTC
TCTGCCAATAGTTTACTACCAGCTGGCAAGCCTGCGAATCTGAGTGTCAT
CCAAGTGGCACTAAAAGAATCGGTATGGATGACTCTGCTCCCATGTTTGT
GGAGAACAGGAGCTGAAGCTAAAGAAGAAAAAGAAGAAGATAAGAACAAG
CAGAAGGTCAAGAAGCCCAGTGAAGAAGTGTCCTGGTTCCCGTAGCCCAG
GGTGCCTCAGCAATCGCAGCAGAAGATCAAGATACCCACTACTCCGGCGC
ACCACCAACTACGTCCACCACCACAGAGGCACCTATACTTCTGACCCCAT
TGGGATCCAGTTGGCAGAGGCTAGGTGATGAGGCCAGGAACCGGGAAGAT
GGTGCAAAACCTACTGCAAACGCCAGGTGAAGGCAGGACGTTGGGCGAGA
TCTCAGCAGTGGTCCGGCCTCTGCTGCTGA
UFO11553.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:03:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7432-RB | 2921 | CG7432-RB | 549..1617 | 9..1080 | 4775 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:03:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19668354..19669210 | 138..997 | 3715 | 98 | Plus |
| 3R | 32079331 | 3R | 19668204..19668291 | 51..138 | 440 | 100 | Plus |
| 3R | 32079331 | 3R | 19665555..19665597 | 9..51 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:03:35 has no hits.
UFO11553.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-31 11:49:47 Download gff for
UFO11553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7432-RB | 454..1527 | 1..1079 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:25 Download gff for
UFO11553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7432-RB | 543..1616 | 1..1079 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:46:44 Download gff for
UFO11553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7432-RB | 543..1616 | 1..1079 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:46:44 Download gff for
UFO11553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19665549..19665597 | 1..51 | 92 | -> | Plus |
| 3R | 19668205..19668291 | 52..138 | 100 | -> | Plus |
| 3R | 19668355..19669292 | 139..1079 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:25 Download gff for
UFO11553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15491271..15491319 | 1..51 | 92 | -> | Plus |
| arm_3R | 15493927..15494013 | 52..138 | 100 | -> | Plus |
| arm_3R | 15494077..15495014 | 139..1079 | 97 | | Plus |
