UFO11554.5prime Sequence
670 bp (670 high quality bases) assembled on 2012-05-31
> UFO11554.5prime
CAGTCGACATGTACGCCGGTCGGGCGACACAATTTGCCAAAACCATCAGC
AGCATGGCGTGCAGCATACAGAAGCAACCTCAAGCTCCGCAATCAGTGGA
TCCTGGCACTGCAGCAGTGGATCGGGTGGGTGGAGGAGGCGGTGGCCCCA
GTGGAGCTGGCACCGTTCCCTCCACGCCGAAAGCCAAGACCGCCCAGCCG
AGGGGCTCCCTGCCAACGGACGTGAACCATCCACCGTTGGAATTTCAGTG
GCCACCGCCCGTTCCCGTTTCCATACACACGAGCAACTTGCGTCTGAACA
TGATGAACCAGGATCCCAAGGACCTCCACACAGCCAGAGCCATTATCGAG
GAGCTGCTCTCCAAGGTGCGCTTCCAGACGGAGCACATCATGAAGTGGCG
CAAAGCGTATGCCATGCAGGTCCAGCAACACTATCGTTACCAGAAGGAGA
AATCTGATCAGATGAACTCGTTGACCTCGCAGCTCTTGCTCTTGGAATCC
CGACTGAAGCGGAAGCAGAATCAGATAGCCAGTCTATTGAACCATCGGGA
GTTGACCATCCAGCGCCAGCAGAAGATCATCGACACCCTGTCCTCCCGGC
TGGTGGATCACGGGGCTGGAGACCTTTGAACTAGCTATGCCAGCGAGCTG
GACTCCCTGAACGACTCCGG
UFO11554.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:03:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43861-RD | 3486 | CG4-RD | 721..1379 | 9..667 | 3160 | 98.8 | Plus |
| CG43861-RC | 2686 | CG43861-RC | 721..1379 | 9..667 | 3160 | 98.8 | Plus |
| CG43861-RB | 2907 | CG43861-RB | 721..1379 | 9..667 | 3160 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:03:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19971404..19971816 | 421..9 | 2020 | 99.3 | Minus |
| 2L | 23513712 | 2L | 19971070..19971320 | 667..417 | 1115 | 98 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:03:39 has no hits.
UFO11554.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-31 11:49:48 Download gff for
UFO11554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13966-RB | 714..1381 | 1..670 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:26 Download gff for
UFO11554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43861-RA | 714..1381 | 1..670 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:46:46 Download gff for
UFO11554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43861-RB | 714..1381 | 1..670 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:46:46 Download gff for
UFO11554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19971068..19971317 | 420..670 | 97 | <- | Minus |
| 2L | 19971406..19971823 | 1..419 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:26 Download gff for
UFO11554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19971068..19971317 | 420..670 | 97 | <- | Minus |
| arm_2L | 19971406..19971823 | 1..419 | 98 | | Minus |
