UFO11601.5prime Sequence
1111 bp (988 high quality bases) assembled on 2012-06-12
> UFO11601.5prime
CAGTCGACATGGCTGTCTCGTTGATGTGGTTGTACATACGTATTCATAAG
TGTGACATTCGTCCATTTGTGGTAGAGGGGAAACAAGTTGGTCTTATTAA
GTCAGATGTTTTAAAACATCTCGAAAAGTATCCTGAAGTATTTTGCATTC
GTGCTTGTGAGCAAACTAAACAGGGTTTGGTAGAGCTAAATCCTGCTTTT
CGTGACTATAACGAGCGCACTGAGCAACTGGAAAAGGTTTTGCGTAACTT
GCGCTCCGAGGGACTTTTTCCTGCATTACAGGGATGGAGAGATGAGTATT
TCGAGGTAAAAGCAGACTGCAGAGCTCTACTTAAAATGGAACGAGCTGCT
ACTCCGCTCTTTGGAGTGCGCAAGTACGGCGTCGATATAAACGGTTACGT
AAGACATCCGACGCTTGGACTATGCATTTGGCTGCAGCAGCGGTCAAACA
CAAAAGAGACCTGGCCTGGAAAGTGGGACAATATGGTAGGCGGTGGACTT
TCAGTCGGCTTTGGTATTAAGGAAACAGCCATTAAGGAGGCTGCAGAGGA
GGCATCAATTCCTTCTGACCTAGTCAAGAATTTGGTGTCCGCAGGATGTG
TCTCATTTTACTTTGAAAGCCGACAAGGACTTTTTCCCAATACCGAATAT
GTTTTCGACTTAGAGCTACCGCTTGACTTTGTGCCTCAAAACGCTGACGG
GGAGGTCCAGGCCTTTGAGCTGCTAACAGCCAAGGACTGTGTGGAGCGCG
TTTTTACTTCAGATTTCAAGACAACTTCAGCGCCTGTGGTGATTGATTTT
CTTATCCGACACGGTCACATAACAGCAGATGATGTTGTCGACTTCACACA
AATCGTTGAGCTCTTGCACGTGCCCTTACAGTCCATATATACGTACAGAC
ACGCTTTGAGCAATCCATAAAACACCTCAATTCTTGCCAGTGATTCCAAA
ACTGTACTGTGCATATTTCAGAAATATCAATGGAGAATGGCACAAGAAGG
CGATGCAGCTTCTAGAACATCGTTGGCGCGGCGGGCCCAGTAAGTGGTCT
AATCTTATCATATCATATCATATTCACACTAGCTTAGGAAATCTGCCATG
ACTATGTGCTT
UFO11601.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:03:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12567-RD | 1875 | CG12567-RD | 32..1034 | 9..1003 | 4800 | 99.1 | Plus |
| CG12567-RG | 1907 | CG12567-RG | 95..1066 | 40..1003 | 4645 | 99.1 | Plus |
| CG12567-RF | 1885 | CG12567-RF | 73..1044 | 40..1003 | 4645 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:03:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 23162212..23162876 | 834..170 | 3310 | 99.8 | Minus |
| 2L | 23513712 | 2L | 23323955..23324192 | 834..597 | 1055 | 96.2 | Minus |
| 2L | 23513712 | 2L | 23415916..23416153 | 597..834 | 1055 | 96.2 | Plus |
| 2L | 23513712 | 2L | 23162924..23163058 | 174..40 | 675 | 100 | Minus |
| 2L | 23513712 | 2L | 23161963..23162140 | 1003..834 | 490 | 95.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:03:54 has no hits.
UFO11601.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-12 09:40:39 Download gff for
UFO11601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12567-RD | 32..1034 | 9..1003 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:36 Download gff for
UFO11601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12567-RD | 32..1034 | 9..1003 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:46:53 Download gff for
UFO11601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12567-RD | 32..1034 | 9..1003 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:46:53 Download gff for
UFO11601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 23161963..23162139 | 835..1003 | 95 | <- | Minus |
| 2L | 23162212..23162872 | 174..834 | 99 | <- | Minus |
| 2L | 23162925..23163058 | 40..173 | 100 | <- | Minus |
| 2L | 23173892..23173922 | 9..39 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:36 Download gff for
UFO11601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2LHet | 20474..20650 | 835..1003 | 95 | <- | Minus |
| 2LHet | 20723..21383 | 174..834 | 99 | <- | Minus |
| 2LHet | 21436..21569 | 32..173 | 94 | <- | Minus |
| 2LHet | 32411..32433 | 9..31 | 100 | | Minus |
