UFO11602.5prime Sequence
1099 bp (999 high quality bases) assembled on 2012-06-12
> UFO11602.5prime
CAGTCGACATGGAAACGGCCAGAATGGAGACGGCGATGGAGACACATTTT
ATGGCCAAAATGGGGAAGTGGATGACCCCTGAGGAGGAGGCGCGTCAAAA
GTTCATCATGAGGGAGCGGGACCGCGAGCGGAAACGGATCAAGCGCATGA
ATCCCGAGTACAGGCAGATGGAACGAGAGCGGGATCGGTTCCGCAAGCTG
ACACCCAGGCCCAGTCTGATGACCCCCGAGGAGGAGGCCCGCCACAAGTT
CATCATGCGGGAGCGGGATCGCGAGAGGAAGCGGATCAAGCGCCTCAATC
CCGAGTACCGGCGAATGGAACGCGAGCGCGATCGATTCCGCAAGAAGGCA
CGACGTGCTAACGTAGCATTTTTCCAATATTCTATATTATCTATAAACAT
AATCCCACACTCGAACACTCGATTCACACGACACACACACACACACTCAC
ATGGCTTGAGAGATGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCC
CAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTA
GCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAA
ACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAG
GTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATT
ACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATT
CTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAG
CGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAA
CGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTG
AAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTTCTCAATAAACC
CTTAGGAAATAGGGCCAGGTTTTCACCGTACACCGCACATCTGGCGAATA
TATGGTGTAAGAACTGCGGAATCGTCGGGGTATTCACCTCAGAGCGGATG
AAACGTTCAGTTGCTCATGAAACGGTGTTAACAAGGGTGAACCCCATCC
UFO11602.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:03:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5674-RB | 3371 | CG5674-RB | 168..623 | 9..464 | 2280 | 100 | Plus |
| CG5674-RA | 3112 | CG5674-RA | 168..506 | 9..347 | 1695 | 100 | Plus |
| CG5674-RE | 2980 | CG5674-RE | 168..464 | 9..308 | 1105 | 91.7 | Plus |
| CG5674-RB | 3371 | CG5674-RB | 230..356 | 218..344 | 395 | 87.4 | Plus |
| CG5674-RB | 3371 | CG5674-RB | 377..503 | 71..197 | 395 | 87.4 | Plus |
| CG5674-RA | 3112 | CG5674-RA | 230..356 | 218..344 | 395 | 87.4 | Plus |
| CG5674-RA | 3112 | CG5674-RA | 377..503 | 71..197 | 395 | 87.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:03:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17971872..17972120 | 216..464 | 1245 | 100 | Plus |
| 2L | 23513712 | 2L | 17969370..17969518 | 67..215 | 745 | 100 | Plus |
| 2L | 23513712 | 2L | 17969374..17969500 | 218..344 | 395 | 87.4 | Plus |
| 2L | 23513712 | 2L | 17971874..17972000 | 71..197 | 395 | 87.4 | Plus |
| 2L | 23513712 | 2L | 17963546..17963605 | 9..68 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:03:57 has no hits.
UFO11602.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-12 09:40:40 Download gff for
UFO11602.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5674-RB | 205..664 | 2..464 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:37 Download gff for
UFO11602.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5674-RB | 164..623 | 2..464 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:46:54 Download gff for
UFO11602.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5674-RB | 164..623 | 2..464 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:46:54 Download gff for
UFO11602.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17963542..17963605 | 2..68 | 94 | -> | Plus |
| 2L | 17969372..17969518 | 69..215 | 100 | -> | Plus |
| 2L | 17971872..17972120 | 216..464 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:37 Download gff for
UFO11602.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17969372..17969518 | 69..215 | 100 | -> | Plus |
| arm_2L | 17971872..17972120 | 216..464 | 100 | == | Plus |
| arm_2L | 17963542..17963605 | 2..68 | 94 | -> | Plus |
