UFO11603.5prime Sequence
1058 bp (963 high quality bases) assembled on 2012-06-12
> UFO11603.5prime
CAGTCGACATGAAGATCTTTGTGTGTCTCCTGGCTACCTTGGCTGCCACC
GCATCGGCTGGCTTCATTGGCGGATCCGGCGGTGGTGGCGGTGGTGGCCA
CCAGGAGGTGAAGACCATCCAGGTGATCCACCAGGAGGGTGGCGGCTACT
CCGGCGGCGGTGGTCATGGCGGTTACTCTGGTGGCCATGGAGGCTACTCT
GGCGGCGGCCATCAGGAGATTAAGACCATCAAGGTCATTCAGCAGGAAGG
TGGCGGCTATTCCGGCGGTCATGGCGGTTACTCCGGTGGTCACGGTGGCT
ACTCTGGCGGTGGACACCAGGAGGTGAAGACCGTTAAGGTCATCCATGAG
GAGGGACATGCCCTGGGCGGCGGCGGTTATGCCGGAGGCCTTGCCGGCCA
TGGACACGGACATGGTGGCCATCAGGAGGTAAAATTGGTCAAGGTCATCC
ATGAGGAGGGCGGTCATGGCCACGGACACGGTGGTGGCTACTCCCACGGT
GGTGGCTACTCCGGCGGTCATCAGGAGGTTAAGACTGTGAAGGTCATCCA
TCAGGAGGTTGGCGGTCATGGCGGTTACTCTGGCGGACATGGTGGCTACT
CTGGCGGCGGTCACCAGGAGGTCAAGACCGTTAAGGTCATCCACGAGGAA
AGACACGCTTTGGGCGGCGGCGGCGGCTATGCCGGTGGCTACTCCGGCCA
TGGACATGGACATGGCGGCCACGAGGAAGTGAAGGTGGTCAAGGTGATCC
ATGAGGAGGGCGGTCACAGCAACGATCACGGTCATTCGCACGGCGGATTC
GAAGAGGTCAAGACCATCAAGGTCATTCACGAGGACGTGCCATGCCAACG
GCCACGGACCCGCCCCATCATCAGCAACGAATACCTGCCGCCCAGCAATG
ATTATCTGCCCCCCGTATCCGCTCCCCAGCCCGGGATATCTTGCCCCTAT
CCTTCAGCTGGAAAGCAAGCTTTCTAAACCATTCCGTTTGGCGCGCGGTC
AGGTAATGTGTCATAAATCTATATCATATCATATCATGATTCCAACTTAG
GCTAGAAA
UFO11603.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:04:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15731-RA | 1180 | CG15731-RA | 74..1029 | 9..963 | 4575 | 98.9 | Plus |
CG15731-RA | 1180 | CG15731-RA | 626..847 | 264..482 | 590 | 84.7 | Plus |
CG15731-RA | 1180 | CG15731-RA | 329..547 | 561..782 | 560 | 83.8 | Plus |
CG15731-RA | 1180 | CG15731-RA | 161..303 | 207..343 | 315 | 81.8 | Plus |
CG15731-RA | 1180 | CG15731-RA | 272..408 | 96..238 | 315 | 81.8 | Plus |
CG15731-RA | 1180 | CG15731-RA | 629..717 | 162..250 | 265 | 86.5 | Plus |
CG15731-RA | 1180 | CG15731-RA | 227..313 | 564..650 | 255 | 86.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:03:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12456560..12457511 | 963..13 | 4450 | 98.7 | Minus |
X | 23542271 | X | 12456742..12456963 | 482..264 | 565 | 84.7 | Minus |
X | 23542271 | X | 12457042..12457260 | 782..561 | 535 | 83.8 | Minus |
X | 23542271 | X | 12457181..12457317 | 238..96 | 290 | 81.8 | Minus |
X | 23542271 | X | 12457286..12457428 | 343..207 | 290 | 81.8 | Minus |
X | 23542271 | X | 12456872..12456960 | 250..162 | 265 | 86.5 | Minus |
X | 23542271 | X | 12457276..12457362 | 650..564 | 255 | 86.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:04:00 has no hits.
UFO11603.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-12 09:40:41 Download gff for
UFO11603.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15731-RA | 66..1026 | 1..963 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:39 Download gff for
UFO11603.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15731-RA | 69..1029 | 1..963 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:46:55 Download gff for
UFO11603.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15731-RA | 69..1029 | 1..963 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:46:55 Download gff for
UFO11603.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12456587..12457511 | 13..934 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:39 Download gff for
UFO11603.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12350620..12351544 | 13..934 | 99 | | Minus |