UFO11604.5prime Sequence
1107 bp (1008 high quality bases) assembled on 2012-06-12
> UFO11604.5prime
CAGTCGACATGTACATCACAACGGGCAAAACGTTTGCGGTGCTGAAAGGA
CCTTTACGTGATTGTTTTTTTCTTAGTAAGAGATGGCCAGCTGTTCAACA
ACTGCACTTAAGTGTCGCAATGGGAAATTATGTGAATGAAGCCTCAATTC
CCCTTCCAATCAATGTGGACTCTGCGGAAACAACTCGATTCTCCCCCCAG
CGCTCGCGTGACATTTCGTCTACAGTGATTAATGCACAAGCACCAATCTC
AAGCATTGATATCACAACTGACAACAGTTTTCATGCAGTCCTAAGCGATC
CAAATATTTGTCAAGATCCACATGTACAGTCCTATGATTGTTTCGGGTTG
ATCAGTCTTAATTCCGCGATGCAAAGCAATGTACCAACACCGTTTGGGGG
GCTTAACAAGTTTTCTCATCTGAACATGCCTGGCGGACAATGGTCCCAGG
AATTCAAGTTTACAGCGCAAAACATGCAGTGCTCTCACTACAGCGGTCTT
CGCGAAAGTTTGCGAGCGGATTGGGCGACTTACGATCAGAATGCTACTCT
TAAAACGAATGACCAAGGGTTGTTTAATCGAAGATATTATAGCACCCAAT
CACCTATGCAAAACTCTTCCACAAAAACACCTACAGGTGCAAAACTAAGT
AAAAGTGAGCAGCTGAAGAGGGCATTTAAGGAATATGGAGCGCCAATTGT
TGCGTTTCACGTAGAATTTCACTGATTTCTCTTGCCGGTTTCTATGTGCT
TGTATCAAGTGGCATAAACTTGGTCCCAGCTCTGGAGTGTATTGGAATTG
CATCACCCGCTATTGTAGAAAAAGTGGCAACGGGGAGCACCTTTGTTGTT
GCGTATGCCGTACACAAAGTCTTTGCCCCTGCTAGAATAGTATCACGTTA
GGTTCTGTGCCATTTGTTGTACGCTATATTCGATCTAAGAAATCGCAAAT
ACCAAGCCAAAAAATACTGCAAGCTTTCTAGAACATTCGTTTGGCGGCGC
GGGCCCAGGTAAGTGTCATATCATAATCATATCCTAATCATATCACACTA
GCTAGAAAATCCTGGTCAATGAACTAGGTGCTTGGAATTCTCACAATAAA
AAACGCC
UFO11604.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:04:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17508-RA | 1228 | CG17508-RA | 82..1044 | 9..968 | 4740 | 99.7 | Plus |
| CG17508-RB | 1145 | CG17508-RB | 82..641 | 9..568 | 2800 | 100 | Plus |
| CG15403-RA | 855 | CG15403-RA | 411..663 | 646..896 | 300 | 75.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:04:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5609011..5609490 | 89..568 | 2400 | 100 | Plus |
| 2R | 25286936 | 2R | 5611190..5611402 | 758..968 | 965 | 99.1 | Plus |
| 2R | 25286936 | 2R | 5610062..5610256 | 566..759 | 925 | 99.5 | Plus |
| 2R | 25286936 | 2R | 5608716..5608797 | 9..90 | 410 | 100 | Plus |
| 2L | 23513712 | 2L | 3129045..3129288 | 646..888 | 270 | 75 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:04:04 has no hits.
UFO11604.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-12 09:40:41 Download gff for
UFO11604.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17508-RA | 93..1062 | 9..976 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:42 Download gff for
UFO11604.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17508-RA | 82..1051 | 9..976 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:46:58 Download gff for
UFO11604.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17508-RA | 82..1051 | 9..976 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:46:58 Download gff for
UFO11604.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5608716..5608797 | 9..90 | 100 | -> | Plus |
| 2R | 5609013..5609489 | 91..567 | 100 | -> | Plus |
| 2R | 5610064..5610256 | 568..759 | 99 | -> | Plus |
| 2R | 5611192..5611409 | 760..976 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:42 Download gff for
UFO11604.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1496221..1496302 | 9..90 | 100 | -> | Plus |
| arm_2R | 1497569..1497761 | 568..759 | 99 | -> | Plus |
| arm_2R | 1498697..1498914 | 760..976 | 97 | | Plus |
| arm_2R | 1496518..1496994 | 91..567 | 100 | -> | Plus |
