UFO11607.5prime Sequence
1087 bp (976 high quality bases) assembled on 2012-06-12
> UFO11607.5prime
CAGTCGACATGTTGCGGCAATTTATAGTATCTACGGTAGGCCGTCGCCTG
CAACTACCTATGATGGCCCAAAGTCGCCTCGCCAGCAATTTGGACAAAAC
TGAGTACACAACACCCGGGGAAATTGTGGACTACGATGATCCGCCGCATT
TGCCAGTTCCGGAATATCCTGTCCGTCCCGATGAGCCGCTGGAAACTCGC
AAGCAGCGCCTTTTGTATCAAAGCAGGAAACGCGGAATGCTGGAAAACGA
TCTCTTGCTGAGCACTTTTGTGGCCAAGCATTTGAAGGACTTCAATGCCG
AGCAGACCGCCGAGTACGATCAGTTGATCAATGGTGTCAGCAACGACTGG
GATATATTCTACTGGGCCACCGATACCAAGCCAACACCTCCTCAATTCGA
TACCGAAATAATGCGTCTGCTAAAGGAGCACGTCAAAAATCATGAAAAAG
TGCAAAGGATAAGGCAGCCGGATTTGGCAAGCTTTCTAGACCATTCGTTT
GGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCA
TAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCT
CACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGA
TGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCT
CGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAAT
TCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAAC
CTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATATATTTGCC
CATGGTGAAAACGGGGGCGAGAAGTTGTCCATATGGCCACGTTTAAATCA
AAACTGGTGAACTCACCCAGGGATGGGCTGAGACGAAAAACATATTTCTC
AATAAACCCTTTAGGAATAGGCAGGTTTTCGCGTACACGCCCACATCTGC
GAATATATGTGGTAAGAACTGCGGAATCGTCTGGGATCACTCAGAGCGGA
GGAACGTTCAGGTTGTCATGGGAACGGGTGTACCAGG
UFO11607.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:04:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12895-RB | 667 | CG12895-RB | 46..513 | 9..476 | 2340 | 100 | Plus |
| CG12895-RA | 593 | CG12895-RA | 46..513 | 9..476 | 2340 | 100 | Plus |
| CG14757-RA | 739 | CG14757-RA | 246..496 | 123..373 | 565 | 82.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:04:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10436752..10437020 | 476..208 | 1345 | 100 | Minus |
| 2R | 25286936 | 2R | 10437082..10437263 | 208..27 | 910 | 100 | Minus |
| 2R | 25286936 | 2R | 8172607..8172749 | 373..231 | 415 | 86 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:04:13 has no hits.
UFO11607.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-12 09:40:44 Download gff for
UFO11607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12895-RA | 23..498 | 9..485 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:48 Download gff for
UFO11607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12895-RA | 46..521 | 9..485 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:47:03 Download gff for
UFO11607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12895-RA | 46..521 | 9..485 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:47:03 Download gff for
UFO11607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10436752..10437019 | 209..476 | 100 | <- | Minus |
| 2R | 10437082..10437263 | 27..208 | 100 | <- | Minus |
| 2R | 10437320..10437337 | 9..26 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:48 Download gff for
UFO11607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6324257..6324524 | 209..476 | 100 | <- | Minus |
| arm_2R | 6324587..6324768 | 27..208 | 100 | <- | Minus |
| arm_2R | 6324825..6324842 | 9..26 | 100 | | Minus |
