UFO11608.5prime Sequence
1101 bp (964 high quality bases) assembled on 2012-06-12
> UFO11608.5prime
CAGTCGACATGACTCAGTTTGGCCTGCACGGCTGCAGCTACATTCTGTTC
TGGTTCCTTCTCGCCTGCGCGGCGGCGGACCTTCAGGAGAATCAGCAGTC
GCGCATCATCAATGGAAGCGTGGCCAAGGCGGACGAGACGCGCCACCTGG
TCTCCATCCGCCTTCTCCGCCACGACAACAACTTTGGAAGCGGCCACATC
TGCGGCGGGGCGCTAATCGCGCCCAGAAAGGTTCTGACCGCAGCGCACTG
CCTGTACAACAATCAGAGAAAGCGCTTTCGGCGGGCCAGCGAATTCGTAG
TGGTTCTGGGCACGCTGAACCGCTTCGAGCACCGCAATGGCACCATCGTG
TCCCAGGTGAGTTCCATGGCCTACATGCACACCTTCAGCCCGGACAGCAT
GCGCGACGACGTGGGCATCCTTTTTCTGCGCACCGGGCTGCCGATGTCTC
CAGGCGGTGGTGTCCATCTCACAGTGGCCCCCATCCAGCTGGCGGGCCAG
ATCACGCCCCCCGGCAAGCTGTGCCAGGTGGCCGGCTGGGGTCGAACCGA
GCAGAGCTCCCTCTCCAACATCCTGCTGACGGCCAACGTGAGCACCATCC
GGCACCAGACCTGCCGCATGATCTACAGGTCCGGCCTGCTGCCCGGGATG
ATGTGCGCAGGACGCCTGCAGGGCGGCACCGATTCTTGTCAAGGCGACTC
CGGCGGACCGTTGGTGCACGAGGGCCGTCTGGTGGGTGTGGTCTCCTGGG
GCTACGGATGCGCAGAGCCGGGACTGCCGGGAGTCTACGTGGACGTGGAG
TACTACCGCCAGTGGATAGAGGGACGCAGCGGGCTCCCCATTCCAGGCTG
GCTACCGGACTGTTCCTACTCCTGCTCCTGCCCCTGCTGATGCGGTGCTC
GGGGTCGTGACTAGCAAGCTTCTAGAACATTCGGTTGGCGCGCGGGCCAG
GTTAGTGGTCATAATCATAATCATAATCATGTCTTATCCCAACTAGCCTA
GAAGATCCGTGTCGTGACTAGGGCTTGAATTTTCACAATAACAAACGCCG
GCGCAACCTGACGTTTCTGAACAATCTCGGAATGGGATTCTGAGGGCATT
A
UFO11608.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:04:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14780-RA | 1082 | CG14780-RA | 45..950 | 9..913 | 4490 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:04:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1473233..1473595 | 552..913 | 1750 | 99.4 | Plus |
| X | 23542271 | X | 1472876..1473170 | 260..554 | 1475 | 100 | Plus |
| X | 23542271 | X | 1472566..1472816 | 9..259 | 1255 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:04:17 has no hits.
UFO11608.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-12 09:40:44 Download gff for
UFO11608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14780-RA | 37..951 | 1..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:50 Download gff for
UFO11608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14780-RA | 37..951 | 1..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:47:04 Download gff for
UFO11608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14780-RA | 40..954 | 1..919 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:47:04 Download gff for
UFO11608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1472561..1472816 | 1..259 | 98 | -> | Plus |
| X | 1472876..1473170 | 260..554 | 100 | -> | Plus |
| X | 1473236..1473591 | 555..909 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:50 Download gff for
UFO11608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1366594..1366849 | 1..259 | 98 | -> | Plus |
| arm_X | 1366909..1367203 | 260..554 | 100 | -> | Plus |
| arm_X | 1367269..1367624 | 555..909 | 99 | == | Plus |
