UFO11609.5prime Sequence
924 bp (832 high quality bases) assembled on 2012-06-12
> UFO11609.5prime
CAGTCGACATGGCCAAGGGCATTGCTTCCACTCGTTTGCAACGGGAGGAT
AGCTTCCGGCTGAGGGCATACGGCTCCATACGCAGCTTTATCGACGGCGG
CGAGCGGAAGTTGTCCAACTCCTTCTTCTTCAACCGCCAGCAAAGTCAAC
GGCCATCGGAGTGCCCGGAATACGACAGCGTCAGCATGTCGAAGCTGAGG
CGGGAGAGCAGCTTCCTGCGGCGCGGCTCCGTCAGCTCCTCCTGGTCGAT
TAGCGATAGTTCCGGCTCCGGATCGAACAACTCCGGCAACTCACAAACGC
AGTCGCAGTACCAGCAGCACCAGCAACAGCTACAGCAGCACTGTCGCGAT
CCCCTGCTCGGCTGGCTGGAGATTGCCATTAGCTATCGTGAGGCCTTCCA
CAGCCTCGACTGCACCATGGTGCGTGCGCGGGATCTGCCCGCCATGGATG
CGGCCGGATTGGCGGACCCGTACTGCAAGCTCAACATCATTACGCCGGAG
GCGCACACCAAGTACACGCGATGGCAGCGCACAAAGACGGTGCACAAGAC
CCGCAATCCGGAGTTCAACGAAACGCTGCAGTTCGTCGGCGTGGAGCCCG
AGGAGCTGGGTAACTCGCTGATTTACGTGGCCCTTTTCGACGACGACAAG
TACGGCCACGACTTTCTCGGCGCGGCCAAGGTCTGCCTTTCCACGGTGCA
CAGCACGTCGCAGTACCGGATTTCGGTGCCACTCGGCGTGGAGGACCAGT
ACAGCAACGCGGCGGAGATGGCCCAGAACTGCATGCAGTGTCCCGTTGTC
AACACAGCTGTGGTGGACTGACACTGTGCTGAACACGAGCACTCCACTAC
ACAAAACACGAGACACTAAATACCCACTGGACGTGACGCACATCCTTGTT
CATACAGAACGAAGATGTGTAAAG
UFO11609.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:04:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rph-RD | 3173 | CG11556-RD | 1253..2026 | 8..781 | 3870 | 100 | Plus |
| Rph-RB | 3341 | CG11556-RB | 1421..2194 | 8..781 | 3870 | 100 | Plus |
| Rph-RA | 2826 | CG11556-RA | 906..1679 | 8..781 | 3870 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:04:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10750923..10751613 | 698..8 | 3455 | 100 | Minus |
| X | 23542271 | X | 10750285..10750371 | 781..695 | 435 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 03:04:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1058..1089 | 309..340 | 115 | 84.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2338 | 308..340 | 111 | 81.8 | Plus |
UFO11609.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-12 09:40:45 Download gff for
UFO11609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rph-RB | 1415..2196 | 1..786 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:52 Download gff for
UFO11609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rph-RA | 900..1681 | 1..786 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:47:06 Download gff for
UFO11609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rph-RA | 900..1681 | 1..786 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:47:06 Download gff for
UFO11609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10750285..10750370 | 696..781 | 100 | <- | Minus |
| X | 10750926..10751617 | 1..695 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:52 Download gff for
UFO11609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10644318..10644403 | 696..781 | 100 | <- | Minus |
| arm_X | 10644959..10645650 | 1..695 | 99 | | Minus |
