UFO11610.5prime Sequence
1157 bp (953 high quality bases) assembled on 2012-06-12
> UFO11610.5prime
CAGTCGACATGGCCAAAACCCGCATCAAGATGACGCCGCTGCGCAAGTCC
TCGTCCTCCAAGGGCATTGTGCTACCCATTAATGCCGCTGGAGGGTCGGT
CATTGCAGGCGCCTTAGCAGGAGGAGGAGGTGCAGGAACTGGGAGCGGTG
CTGTCAAGTCGGCGGTGGCCAGCAGCACCACCATTGAACTTGTTGAGAGC
CCCAATAGACATCAGGCCAAGAAGCCCAACACCGGCATTATGCCCATGCC
ACAGCGTTCCCACTCCATTAGCTCCTCGGCCTCCAGCGATGTGCTGTCCA
TAAACTCCGACTACGAAGCCTCGTTACCACTATCAGCCTTAGAGGATTCC
CAGAATGGACTGAACCGCTTGGAGAACGGTCAAGCCAAGAAGAGGAAACT
GTACGTGATCACCGAAAAATCGGATGAGACGAAAGGTCAGACTCTGGAGA
CAAATGGACAGCCCAAGAAGCGTAAGATGTTCGTGGTTGTGGAGCAGGAT
AAAGATGTGGCGGGCAAGAAACTAATGATTATGGCCGACAAGCCGCAGAC
CAATCTTACCCAGCATTTGGAGAAACTACTGCCCGAGCTATTGAATCGCA
TACAGGACAAAGAACAGAAGCAGATCAAACCAGCTCCAGTGGTGACTAAA
GCCAAGCCGGTGGTTAACAATCCCAGACCACATATAACATTGCCGCCCAA
AAAGAATCCAACTAATTTTGCAAAGATCACGTCCACACCAAGCTCAGTGC
CTTCATCCATTCAGATGCCACTGCCAATTCAGAATACCAAGATCCTAAAG
TCCGAGAATTCGGAACTGACAATGATTTCGGATGAGATCGAGACGAACAT
AAATCTATCGCCCGACTTCCGCTTCCTAATGAAAATCCTAACCAAATTGG
AACAGCTGCCCGAAGCCCCACCAGGCAAAACGTTGAGGCGGTTCCATCCA
GATTTCTTCGGGCGAAAGGAGCCTCACAGGTTATTTACCGCCAACCAAGG
ATGGCAAGCTTTCTAAGAACCATTTCGGTTTGGGCGCGGCGGTCCCAAGG
TTAGGTGGTCTTTATAATCTATAATCATAAATTCATTAATTCTAAAATTA
CAAACTTAGAGCCTTAAGAGAGATCTCGTGCCTGGACCTAGGGTGCCTTG
GAAATTT
UFO11610.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:03:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bip1-RB | 1472 | CG7574-RB | 177..1117 | 9..953 | 4550 | 99 | Plus |
| bip1-RA | 1825 | CG7574-RA | 530..1470 | 9..953 | 4550 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:03:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8054724..8055441 | 913..196 | 3560 | 99.7 | Minus |
| 3L | 28110227 | 3L | 8055876..8056064 | 197..9 | 945 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:03:47 has no hits.
UFO11610.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-12 09:40:38 Download gff for
UFO11610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bip1-RB | 168..1126 | 1..966 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:32 Download gff for
UFO11610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bip1-RA | 524..1482 | 1..966 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:46:49 Download gff for
UFO11610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bip1-RA | 524..1482 | 1..966 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:46:49 Download gff for
UFO11610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8054704..8055439 | 198..936 | 99 | <- | Minus |
| 3L | 8055876..8056070 | 1..197 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:32 Download gff for
UFO11610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8047804..8048539 | 198..936 | 99 | <- | Minus |
| arm_3L | 8048976..8049170 | 1..197 | 98 | | Minus |
