UFO11611.5prime Sequence
1008 bp (846 high quality bases) assembled on 2012-06-12
> UFO11611.5prime
CAGTCGACATGAGCCAACCTGCATCTCCTACCAAGTGGCGCACCTCGGCC
AGTGTAATCCTGGTGTCCAGAGATGATGGCAATAACAAAGATTACAAGGT
GCTTATGCTAAAACGCAGTGATGCCACGGCGATTGCGCTCAATCAGACTG
TATTTCCCGGTGGCCTCTTGGACTCTGGGGCCGATGAAAGCGTCGCCTGG
CTGCACTACCTCGAGGAGTTTGGTGTTCCACAAGAGGCACTACGCCGCCT
GGTTCTCATCCGCGAAGATCGTCCTGCCATTCTGGCGCCCCAGGGCACTG
GCTGCTACGATCGGTTCTTTAAGCGTTCCCGCATTTGGGCTCGGGAGATT
ACGCTGCGACTAACCGCCGTGAGGGAATGCTTTGAAGAGGTGGGTCTGTT
GCTTTGCCGGAGTCGGAGTCAACTGGATTTTGGTGCGGTAACTTGCGCTC
AGGCTGTTCCAGACCTGGAGTCGTGGCAGCGAAGGGTGCACAACAAGCCG
GCTGAGTTTCTAACTCTCTGCCGCGAGCTAAATGTAGTTCCAGATTTGTG
GGCTCTGCATGAGTGGTCTGCCTGGGCGAGTCCAGGATTCATACGCAAAG
GGCATGAAACCGTTTTCTTCATGGCTTTTGTGGACAAGCAGCCCGAATTG
CTGGAAGAACCTTCCGAGGTCAAGGAAACGCTGTGGCTGACACCCGTTGA
ACTGCTGCGACTGGCTGATTTGGGCAATGTTTGGTTCATGCCACCACAGG
TCTACGAATTGTCCCGGGTTGATGGAATTAAGCGTATCAATCCCTGTTGG
AATTTGCCATCAAGCGCAGCGGATTGGGACGACCATGTTCTTGCCGATTA
TTATAACTGCCAGGGCTCATGGTTTCGTCTTACCTGCGATGACTTCTATG
TCCCGACCTCACTTGATCACGAATATCAGTTCGGGATCAGAAAAAAGTTT
AGGTCGTCAAGCATCTGCATCGCTAACTATGTCTGCGTTCGAACTGGAGT
TAAAATAT
UFO11611.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:03:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10195-RB | 1473 | CG10195-RB | 105..1090 | 9..975 | 4395 | 97.6 | Plus |
| CG10195-RC | 2118 | CG10195-RC | 105..1090 | 9..975 | 4395 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:03:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19483888..19484147 | 602..343 | 1300 | 100 | Minus |
| 2L | 23513712 | 2L | 19484213..19484460 | 344..97 | 1240 | 100 | Minus |
| 2L | 23513712 | 2L | 19483447..19483635 | 868..683 | 705 | 95.2 | Minus |
| 2L | 23513712 | 2L | 19484511..19484601 | 99..9 | 455 | 100 | Minus |
| 2L | 23513712 | 2L | 19483692..19483774 | 683..601 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:03:50 has no hits.
UFO11611.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-12 09:40:39 Download gff for
UFO11611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10195-RB | 94..1000 | 1..901 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:34 Download gff for
UFO11611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10195-RC | 97..1003 | 1..901 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:46:52 Download gff for
UFO11611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10195-RC | 97..1003 | 1..901 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:46:52 Download gff for
UFO11611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19484214..19484458 | 99..343 | 100 | <- | Minus |
| 2L | 19484508..19484606 | 1..98 | 92 | | Minus |
| 2L | 19483427..19483634 | 684..885 | 95 | <- | Minus |
| 2L | 19483692..19483773 | 602..683 | 100 | <- | Minus |
| 2L | 19483889..19484146 | 344..601 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:34 Download gff for
UFO11611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19483692..19483773 | 602..683 | 100 | <- | Minus |
| arm_2L | 19483427..19483634 | 684..885 | 95 | <- | Minus |
| arm_2L | 19483889..19484146 | 344..601 | 100 | <- | Minus |
| arm_2L | 19484214..19484458 | 99..343 | 100 | <- | Minus |
| arm_2L | 19484508..19484606 | 1..98 | 92 | | Minus |
