UFO11613.5prime Sequence
1089 bp (975 high quality bases) assembled on 2012-06-12
> UFO11613.5prime
CAGTCGACATGCTAGTCATAAACTCATGCAGAGCTGCCTCCAGATTGGCG
CTACGCAGCCTCAATTTGCGATCGCCGATCGCAACGCGTACTTTCTCGAC
GGGATTGGCCCTGAAAACGAAAGATGTTGTTAACATAACCTTCGTGCGTG
CCAATGGGGACAAGATTAAGACGTCCGGAAAAGTGGGTGACTCCCTGCTG
GACGTGGTGGTCAACAACAATGTGGATCTGGATGGTTTCGGGGCCTGTGA
GGGCACGCTGACCTGCTCCACCTGCCACCTGATCTTCAAGACCAGCGATT
TCGAGAAACTGCCCGACAAACCCGGTGATGAGGAGCTGGACATGCTGGAT
TTGGCGTACGAACTGACGGACACCTCGCGGCTGGGCTGCCAGATCACCCT
GTCCAAGGATATGGAGGGCCTGGAGGTACATGTGCCCTCCACCATCAATG
ACGCACGTGCCGCGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCC
CAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTA
GCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAA
ACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAG
GTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATT
ACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATT
CTGCCGACATGGAAAGCCATCACAAACGGCATGATGAACCTGAATCGCCA
GCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAA
ACGGGGGCGAAGAAGTTGTCCATATTGCCACGTTTAAATCAAACTGGTGA
AACTCACCCAGGGATTGGCTGAGACGAAAACATATTTCTCAATAAACCCT
TTAAGGAATAGGCCAGGTTTTCACCGTAACACGCCACAATCTGCGAATAT
ATTGTTGTAGAACTGCCGGAAATCGTCGTGCTTCACTCGAGCGATGAAAA
CGTTCAGTTGGCTCATGAACCGGGTACAGGGTGACCTTC
UFO11613.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:04:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1319-RB | 863 | CG1319-RB | 143..598 | 9..464 | 2280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:04:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4292831..4293167 | 128..464 | 1685 | 100 | Plus |
| 3L | 28110227 | 3L | 4292624..4292742 | 9..127 | 595 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:04:33 has no hits.
UFO11613.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-12 09:40:48 Download gff for
UFO11613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1319-RB | 124..583 | 1..464 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:38:00 Download gff for
UFO11613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1319-RB | 139..598 | 1..464 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:47:12 Download gff for
UFO11613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1319-RB | 139..598 | 1..464 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:47:12 Download gff for
UFO11613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4292831..4293167 | 128..464 | 100 | == | Plus |
| 3L | 4292620..4292742 | 1..127 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:38:00 Download gff for
UFO11613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4292620..4292742 | 1..127 | 96 | -> | Plus |
| arm_3L | 4292831..4293167 | 128..464 | 100 | == | Plus |
