UFO11615.5prime Sequence
1081 bp (972 high quality bases) assembled on 2012-06-12
> UFO11615.5prime
CAGTCGACATGCAGTTCGATCCGAAGACACGATGCGGTGGCAGCGTGGTT
AGCTTTACCGTTATGCTGCTGCTGATCATCGGCGCCGATTTCGCCGCTGG
AAGGCCTGATGTGCGCGAGTCGCCCTTCGCCCTCAATCTGCAGCCTCCGC
TGCTGCAGTCGGACGTGACCTTCAGTTCAGGCCAGGGGGGTGGTGCCGGG
CCGAAGGCCATCGACAGCTACGGCAACCCCATCGACGCCCTGCGACCCAT
CGATACGCCCGACGGGCGCAAGGTGGTCAGCGCCCAGGGCGTTCAGTTTG
AGATACCCACATACGCCTCGGGAATCACGGAGATCCGGCGGCCGGCCGAT
GATCTTCTGCCGCCACACATTGATAACACGCCGAAGGATTCGAGCAGCAG
TGGCAGCAGCAGCACCACAACTTTCGTCAACACCACTCCAAGCCCGTTGG
ATGCTGGCAACCCATTCGATTCGGCCACCATTCCTGCCTGGCTGCGTGAC
TTCGACTATCCGGATGTCGGACCGGGCGTGCCCTTTGACCCGGACAACTT
TGGAACAGCGTCGGCCAGCAGCACCCGTAACCCCACCAATCCGCCACGTC
CCCCCACCGTCCCGCCCGTTTCCTCCGCTTTTCCATCCAAAGTCACGCTT
CCGCTTCCAGGCAGCAGCATCAGTAGCAGTAGCAGTGAGGAACCACAGCT
GGTACTCGTTCCGCCCGCTGACCGCGCGGAGGCCGCTTCTGGTTCCGACT
CCCAATTCGGCCCCAATCCTGGACAACTGACCCAACCCACTTCCAACTCT
GTCACGCCTTTTGCAGCCCGCTTCGAGCCATCGGCCAGCAGCTCCAGCTC
CCAGAGCGTTGAACCCTTCCCGCCCAGCAGGTGGAGTACACCAAGAGCGA
CGAGGGCAGGTCATCAGCACCGCCGGTCACCAACAATCAGCGAAAAACGG
AGATTGTGCACCCTCAGCTAGCACCACGGAAAGTACACGGGAGGATTTGG
TGCACCGCTGGCTACTGGGCCCCAAGTCACATCCTTGGTTCAATCCGGAC
CAATCCATCCAGAACGATCGAATCTTATGTG
UFO11615.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:04:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11073-RB | 1964 | CG11073-RB | 454..1479 | 9..1029 | 4840 | 98.5 | Plus |
| CG11073-RD | 3026 | CG11073-RD | 1879..2541 | 372..1029 | 3025 | 97.7 | Plus |
| CG11073-RC | 3290 | CG11073-RC | 2143..2805 | 372..1029 | 3025 | 97.7 | Plus |
| CG11073-RD | 3026 | CG11073-RD | 454..556 | 9..111 | 515 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:04:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22092142..22092718 | 947..372 | 2740 | 99.5 | Minus |
| 2R | 25286936 | 2R | 22094524..22094788 | 372..108 | 1325 | 100 | Minus |
| 2R | 25286936 | 2R | 22098982..22099081 | 108..9 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:04:36 has no hits.
UFO11615.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-12 09:40:48 Download gff for
UFO11615.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11073-RB | 646..1671 | 9..1029 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:38:02 Download gff for
UFO11615.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11073-RB | 454..1479 | 9..1029 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:47:13 Download gff for
UFO11615.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11073-RB | 454..1479 | 9..1029 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:47:13 Download gff for
UFO11615.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22092142..22092717 | 373..947 | 99 | <- | Minus |
| 2R | 22094524..22094787 | 109..372 | 100 | <- | Minus |
| 2R | 22098982..22099081 | 9..108 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:38:02 Download gff for
UFO11615.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17979647..17980222 | 373..947 | 99 | <- | Minus |
| arm_2R | 17982029..17982292 | 109..372 | 100 | <- | Minus |
| arm_2R | 17986487..17986586 | 9..108 | 100 | | Minus |
