UFO11616.5prime Sequence
1117 bp (973 high quality bases) assembled on 2012-06-12
> UFO11616.5prime
CAGTCGACATGTTGCGTACTCTGTCACGCGTTAGCGAATTGCCCATTATT
GTTAAGCAACTGCAAAAACGTTGCCATAACAACAACAACAACAACATCAT
CATCAGCGGATGTCGGATACTTAGCAACAACAACAACAACAGCAGCATCG
ATATCATCAGGAATGGGAGATATTCATCGTCGTTTTTCGGTTTATTCCAG
AATGCAGCCCAAGCAGGTGTTTCGAAAACCAACAATTATGCCACGGAGGC
CACCGTTCAAGTGAATCGGCCCTTCAAGCTGCACCGCCTGGACGAAGGAC
CCGCCACGGAAGTGAAGCTGACCAAGGATCAGGCCCTCAAGTACTACACA
CAGATGCAGACGATCCGTCGGTTGGAGACGGCCGCCGGTAATCTGTACAA
GGAGAAGATCATTCGCGGCTTCTGTCATCTGTATTCCGGCCAGGAGGCAT
GCGCCGTTGGCATGAAGGCGGCGATGCGGGATGTGGACAACATCATCTCG
GCGTACCGTGTCCACGGATGGACCTACCTGATGGGCGTCTCACCCAGCGG
CGTACTGGCTGAGCTCACCGGTGTCCAGGGTGGCTGTGCCCGCGGCAAGG
GTGGCTCCATGCACATGTACGCACCGAACTTCTACGGAGGCAATGGCATC
GTGGGTGCTCAAGTTCCTTTGGGTGCCGGCGTTGGCTTGGCCTGCAAGTA
CAAGGGCAATGGCGGCATGTGCCTGGCCCTCTACGGTGATGGTGCCGCCA
ATCAAGGACAGGTGTTCGAGGCTTACAACATGGCCTACCTGTGGAAACTG
CCTGTGATCTTTGTCTGCGAGACAACAACTACGGAATGGGCACAGTTCTG
AGCGTGCTTCCTGCACCACTGATTACTATACCCGCGGCGACGCTCTGCCC
GGAATCTGGGTGGACGGCATGATGTGCTGGCCGTGCCGCAGCGGCCACCG
AGTTCGCCCATCACTATTGTGACCACTCACGGACCTTTTGGTGATGGAGA
ACGAACACGTACCGGATACCTCTGAACCTCTCCCTGGTTCCGATCCGGGC
ACAATCGTTACCGCCACACCGCGAGAATTCCAGAAGGTGCCCCCAGAGGC
GGTGATTCCCACTCACC
UFO11616.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:04:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)G0334-RC | 2034 | CG7010-RC | 208..1302 | 9..1117 | 4830 | 96.9 | Plus |
| l(1)G0334-RB | 1992 | CG7010-RB | 363..1402 | 64..1117 | 4540 | 96.7 | Plus |
| l(1)G0334-RD | 1667 | CG7010-RD | 175..1077 | 201..1117 | 3870 | 96.3 | Plus |
| l(1)G0334-RB | 1992 | CG7010-RB | 208..267 | 9..68 | 300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:04:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4703554..4704120 | 269..834 | 2785 | 99.8 | Plus |
| X | 23542271 | X | 4702687..4702892 | 64..269 | 1015 | 99.5 | Plus |
| X | 23542271 | X | 4704194..4704372 | 833..1014 | 480 | 92.9 | Plus |
| X | 23542271 | X | 4702532..4702591 | 9..68 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:04:39 has no hits.
UFO11616.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-12 09:40:49 Download gff for
UFO11616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0334-RC | 162..1225 | 1..1075 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:38:05 Download gff for
UFO11616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0334-RC | 200..1263 | 1..1075 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:47:14 Download gff for
UFO11616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0334-RC | 200..1263 | 1..1075 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:47:14 Download gff for
UFO11616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4702524..4702591 | 1..68 | 95 | -> | Plus |
| X | 4702692..4702892 | 69..269 | 100 | -> | Plus |
| X | 4703555..4704119 | 270..833 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:38:05 Download gff for
UFO11616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4596557..4596624 | 1..68 | 95 | -> | Plus |
| arm_X | 4596725..4596925 | 69..269 | 100 | -> | Plus |
| arm_X | 4597588..4598152 | 270..833 | 99 | -> | Plus |
