UFO11617.5prime Sequence
1060 bp (972 high quality bases) assembled on 2012-06-12
> UFO11617.5prime
CAGTCGACATGGAACACTTTCATCAAATACAGCAGCAATTGGCTGCTCAG
CAACAACAACAAGTACAACAGCAACAGTTGCAACAACACCAGGTGGTCGT
CCAGCAGAATCAGCAGCAGGCGCACCAGAACAGCTCCAATACCACAGCCG
GCGTGGGCACCCAACAGCTGTTCACATACAAAATGGCCAGCAGTTTTCCG
AATCCGGCCACGACGATGGCCCAAGTGGTGGCCACATCGAACGCAGCCGG
CACCACGGGCTATGATTATCGTCTAAATATGGCACAGGCAGCCGCAGCAG
CAGCCGTACCCGGCTCCCAGTGGTGGTATTCGGCCGCCAATCAGGGACAG
GTCGATGCCAATACAGCGGCGCAACTGCAGCACCAGCAGCAGCAACAGCA
ACAGCAACAACAGCAGCAGCAGCAACAGCACCAGCAGCAACAACAGATGC
AACAGCAGCAGCAGCAACAGAATGTCATCAATTCGGCGAGCCCCATGAGC
AGAGTCAAGGCCGATGCCAAGCCCAGAGGCCGAATGACCGCCTACGCATA
CTTTGTACAAACTTGCAGAGAGGAGCACAAAAAGAAACATCCCGATGAGA
CGGTGATATTCGCCGAATTCTCGCGGAAGTGCGCCGAACGGTGGAAGACA
ATGGTGGACAAGGAGAAGAAGCGCTTCCACGAAATGGCCGAGAAGGACAA
GCAGCGATATGAGGCGGAAATGCAGAACTATGTGCCGCCCAAGGGAGCGG
TTGTGGGACGCGGCAAGAAGAGGAAACAGATCAAGGACCCCAATGCTCCA
AAACGTTCATTGTCTGCGTTCTTCTGGTTCTGCAATGACGAGAGAAATAA
GTGAAGGCACTTATCCCGAGTTCGGAGTGGGCGACATCGCCAAGAGCTGG
GACGAAAGTGGTCCGATGTGATCCCGAGTCAAGCAGAGTACGAGTCGATG
GCCGAGCGGGACAGGCTCGATATGACGCGAGAATGACGAGTTACAGACGA
GCGGGTAAATAGCATGTCGCCACCGGTCGATGCAGGCGTCGATGCAAGGC
CAGCCAGATT
UFO11617.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:04:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsp1-RG | 2359 | CG12223-RG | 122..1167 | 9..1046 | 4850 | 98.4 | Plus |
| Dsp1-RD | 2903 | CG12223-RD | 779..1824 | 9..1046 | 4850 | 98.4 | Plus |
| Dsp1-RC | 4511 | CG12223-RC | 718..1760 | 9..1046 | 4795 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:04:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16336285..16336743 | 30..488 | 2295 | 100 | Plus |
| X | 23542271 | X | 16337084..16337251 | 646..813 | 840 | 100 | Plus |
| X | 23542271 | X | 16336850..16337009 | 488..647 | 800 | 100 | Plus |
| X | 23542271 | X | 16337381..16337551 | 812..975 | 505 | 95.9 | Plus |
Blast to na_te.dros performed 2014-11-28 03:04:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2402..2854 | 11..472 | 333 | 56.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2358..2837 | 21..470 | 288 | 58.7 | Plus |
UFO11617.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-12 09:40:50 Download gff for
UFO11617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dsp1-RD | 774..1834 | 1..1056 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:38:07 Download gff for
UFO11617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dsp1-RD | 774..1834 | 1..1056 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:47:17 Download gff for
UFO11617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dsp1-RD | 774..1834 | 1..1056 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:47:17 Download gff for
UFO11617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16336288..16336743 | 33..488 | 100 | -> | Plus |
| X | 16336851..16337009 | 489..647 | 100 | -> | Plus |
| X | 16337086..16337249 | 648..811 | 100 | -> | Plus |
| X | 16337381..16337555 | 812..978 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:38:07 Download gff for
UFO11617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16230884..16231042 | 489..647 | 100 | -> | Plus |
| arm_X | 16230321..16230776 | 33..488 | 100 | -> | Plus |
| arm_X | 16231119..16231282 | 648..811 | 100 | -> | Plus |
| arm_X | 16231414..16231588 | 812..978 | 95 | -> | Plus |
