UFO11620.5prime Sequence
1089 bp (988 high quality bases) assembled on 2012-06-12
> UFO11620.5prime
CAGTCGACATGGAGCAGGAAATCGGCACCTGGGACTCGGTACTGTTGGAG
AACCTGTCCGAGGATAGTTTCATAAACAACATCCACCAGCGCTATAAGCG
CGATCACATATATACCTACATTGGAACATCTGTTGTGGCTCTGAATCCAT
ATCATCACATATCCGAGCACTCTCTGGACAATGTCCGCAACTATGGCGAT
AAGGGCATTTTCCAGCTGCCGCCCCACATATATGGTCTCACAAATCTGGC
TTATCAATCGCTCAAAGATCAGAGCGAGGATCAGTGTGTTCTGCTCACCG
GTGAGAGCGGAGCGGGCAAAACGGAGACTTTTAAAATGATCGTGAACTTT
CTGACCCACATACAAGATCGCTCCCACTGCCCCCCAACACCGAATGTTTT
GCGCAAGCAATCCTCAACTAGCTCGGCCAGCGGATTGGTGATGCACGCCC
ACAGGCGAGCCTCCAGCAGCTGCTCCGGCACTGCCAATTTTATTATATGC
AAAAACCGGGCGGAAAATCCGTCAGGCAGTGTTTCACGGCGACAAAGTCC
ATCGCCAGGACCATCGCAGCGATCGCGGACGCGGGCCGAGAGCATCGAGC
GCCAAAGCAGGCGCCACATGCGGGAGAAAATTGTCGACTTTGATTTCTCA
CACCACAAGAGTAGCGAAAACATCAGCGGCCTTCCTGAATCGCACGCCCA
CCACATGCATCCGACCAAGTCGTGCTTCAAGCACCAGCAGACCCAAGTCA
GCGCCTGCACTGCAATGCCCGCAGCAGCCAAGGGATCGCCCAAATACGCG
GTACCCACCGTGTACGGCGGTTGCCGCCAGTGCGGACACAGCAAGTGTGT
CCGTGCTCAGAGCCTGAAAAGGAGGAGCGGGATGATCTACGAGGCAGCAA
CTGCCGCCTGTCTACATAGCCACTGCCACACAATCGGCACATCCGCATCG
CGTAGTGCTCACCTGATGCCGCCAGCACTCGAACAGAGAGTCAGCGGTGC
GGGAGCGGGATCGAGCCTCCCTTATGGGTCCACGCACGTATAATCGCTGT
ACGATGCACAAGCTGATTAGTTCTGAGGCGATCTGGCGG
UFO11620.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:04:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Myo95E-RJ | 4251 | CG5501-RJ | 157..1245 | 9..1085 | 4935 | 97.8 | Plus |
| Myo95E-RB | 5226 | CG5501-RB | 260..1348 | 9..1085 | 4935 | 97.8 | Plus |
| Myo95E-RG | 5302 | CG5501-RG | 260..1348 | 9..1085 | 4935 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:04:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24159847..24160686 | 1060..230 | 3480 | 97.3 | Minus |
| 3R | 32079331 | 3R | 24160747..24160862 | 229..114 | 580 | 100 | Minus |
| 3R | 32079331 | 3R | 24160926..24161030 | 113..9 | 525 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:04:53 has no hits.
UFO11620.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-12 09:40:52 Download gff for
UFO11620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Myo95E-RF | 146..1233 | 1..1075 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:38:14 Download gff for
UFO11620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Myo95E-RG | 252..1339 | 1..1075 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:47:23 Download gff for
UFO11620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Myo95E-RG | 252..1339 | 1..1075 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:47:23 Download gff for
UFO11620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24159828..24160686 | 230..1075 | 97 | <- | Minus |
| 3R | 24160747..24160862 | 114..229 | 100 | <- | Minus |
| 3R | 24160926..24161034 | 1..113 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:38:14 Download gff for
UFO11620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19985550..19986408 | 230..1075 | 97 | <- | Minus |
| arm_3R | 19986469..19986584 | 114..229 | 100 | <- | Minus |
| arm_3R | 19986648..19986756 | 1..113 | 96 | | Minus |
