UFO11621.5prime Sequence
1088 bp (967 high quality bases) assembled on 2012-06-12
> UFO11621.5prime
CAGTCGACATGCATGCCAGATTTGCGGATCCCGAGCCAGCGTCTCCGGAC
AGCGTTGATGGAATCGAAACGGAGTCACTGGAGGCGCGGATTGAGGCCTT
CAAGCAAAATCCCCAGAACATGGCCGCGTTGCGGGAGGCGCTCGACGATG
TGCTCCTGCGGGCTGAGACGGAGGCGAACAGGCGGGCAGTTGAGAGCCAG
AAATCGCAACAGGGCAAGGAAAAACGACCGAGTTTCGCCATACCAGATTT
TAAGAACGGCAAGGTGGTGAATCGCGCTCGAGGATTCGTGGTGCGGATCT
TCGATGCCATATGCAATTGCGCCAACAACAATGCGGCGGCGGCCACGACG
CGTTTCAAGCTGAGAAGCAACAGCGGCGGAGGGGGAGGCGGCGGAGGTGG
TGGTGGCGGAGCCAGCGGAAATGGCAAGCGTCAGCAGTCGCAGAATGAGC
CGGAAACCCTAGTCCTGACCAAGAAGAAGCCCGCCGGCGAAGGCAAGAAA
AAGAAGGGAGTCAGCATGGCCGATGACGTTCAAGCCGGCGTTCGACTGAT
GGACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTG
GTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGA
TCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCG
GCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTG
GATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCC
CTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACAT
GGAAGCCATCACAAACGGCATGATGAACCTGATTCGCCAGCGGCATCAGC
ACCTTTGTCGCCTTGCGTATTAATTTTTGCCCATGTGAAAACGGGGCGAA
GAAGTTGTCCATTATTTGGTCACGGTTTAATCCTGGCTGGTGAAACCTCC
ACCCAAGGATTGCTGAAAACGAAAAAACATATTTTCTCTCAATTACCCGT
TAGGAAATATAGGCAAGGTTTTTCACCGTACACGCCAC
UFO11621.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:04:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9368-RA | 1828 | CG9368-RA | 141..686 | 9..554 | 2730 | 100 | Plus |
| CG9368-RB | 1813 | CG9368-RB | 141..671 | 9..554 | 2495 | 97.3 | Plus |
| CG9368-RD | 2423 | CG9368-RD | 959..1281 | 232..554 | 1615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:04:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19602656..19602978 | 232..554 | 1615 | 100 | Plus |
| 3L | 28110227 | 3L | 19601773..19601977 | 9..213 | 1025 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:04:56 has no hits.
UFO11621.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-12 09:40:53 Download gff for
UFO11621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9368-RA | 111..675 | 1..566 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:38:16 Download gff for
UFO11621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9368-RA | 133..697 | 1..566 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:47:25 Download gff for
UFO11621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9368-RA | 133..697 | 1..566 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:47:25 Download gff for
UFO11621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19601765..19601976 | 1..212 | 98 | -> | Plus |
| 3L | 19602042..19602060 | 213..231 | 100 | -> | Plus |
| 3L | 19602656..19602989 | 232..566 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:38:16 Download gff for
UFO11621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19594865..19595076 | 1..212 | 98 | -> | Plus |
| arm_3L | 19595142..19595160 | 213..231 | 100 | -> | Plus |
| arm_3L | 19595756..19596089 | 232..566 | 98 | == | Plus |
