UFO11624.5prime Sequence
1097 bp (1063 high quality bases) assembled on 2012-06-12
> UFO11624.5prime
CAGTCGACATGTCCTTTCTAGCGCAAACTATGCGTCAAATGCTACGCCAC
GTGCCCAATCGCAGTTTGTTGACGGCAGGTGCCATGCGTCCACTGAGCAT
ATCGCCGGTAATTGGGCAGCAAAACAAGCCGGCGACGGAATCGGTGGATT
TATCGGCCATAGCTAAGGATCAGCAGAAGGAGTGCCTGAGCATCTGCGAG
CGCATCAACCGGCAGGTGCAAAAATCCGAGCAGGGACGACTCTTCGCGGT
TGTCCACCTGTGCGGCAAGCAATTTAAAGTAACTCCAGGAGATATCATCC
TGGTGGAGGGATACTGGCCGCCAACGATAGGCGACGAGATCAGCCTGGAT
AAGGTGCTCCTGGCCGGTGCCCGCGACTTCACGCTCGTGGGAAGGCCCAT
TTTGGAGCCCGGACTCATCTTGGTGAAGGCCACCGTCGTGGAGAAGACGC
TCAGCCACACGAAGACGCACTTTAGGAAGAAGCGCAGGAAGCAGTACATG
CGCATCAACTTCCAGAGATCTCCGCACACCATGGTCCGGATCAATTCAAT
TGAACTGGCTCGTCCAGTGGACGGGAATGGCGAGGGGGAGTCTTCCTCGA
GGCGCTTGTTTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAG
GTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCC
TAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACG
CCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTC
ATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACG
CCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTG
CCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGG
CATCAGCACCTTGTCGCCTTGCGTATATATTTGCCCATGGTGAAACGGGG
GCGAAGAAGTTGTCCATATTGCCACGTTTAAATTCAAACTGGTGAAACCC
CACCCAGGGATTGGCCTGAAAACGAAAAAACTAATTTCTCATAAAAC
UFO11624.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:04:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL21-RB | 866 | CG9730-RB | 83..685 | 9..611 | 3015 | 100 | Plus |
| mRpL21-RC | 1696 | CG9730-RC | 83..685 | 9..611 | 3015 | 100 | Plus |
| mRpL21-RA | 742 | CG9730-RA | 83..685 | 9..611 | 3015 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:04:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19254301..19254835 | 611..77 | 2675 | 100 | Minus |
| 3L | 28110227 | 3L | 19254908..19254979 | 80..9 | 360 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:04:30 has no hits.
UFO11624.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-12 09:40:47 Download gff for
UFO11624.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL21-RA | 73..687 | 1..620 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:57 Download gff for
UFO11624.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL21-RA | 77..691 | 1..620 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:47:11 Download gff for
UFO11624.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL21-RA | 77..691 | 1..620 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:47:11 Download gff for
UFO11624.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19254289..19254833 | 79..627 | 98 | <- | Minus |
| 3L | 19254910..19254985 | 1..78 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:57 Download gff for
UFO11624.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19247389..19247933 | 79..627 | 98 | <- | Minus |
| arm_3L | 19248010..19248085 | 1..78 | 94 | | Minus |
