UFO11628.5prime Sequence
1072 bp (971 high quality bases) assembled on 2012-06-12
> UFO11628.5prime
CAGTCGACATGTCCCTGCAAACGGGCTTGGCTTTCATTTTCACCATATTA
GCCTCTGTTAGTATCGTCGCAGCAATTATTTTGTTGGGCTGGTTCCTCAT
CTGGAAGGCGTTTCTATCGAAATTTCGTCTGGTTCGAGAGCTGTTGGGTC
AGGAGGAGCCGGAGGATCAGCAACCACTTGCTTGGGATCATCAGAATCAA
CAGCCACACCACCACGGCAGAGCCAGGAAAGCTCGCCGAGACGCAAGCTT
TCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATA
ATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGA
CTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGT
TCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACA
GGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATC
GCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCAC
AAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCT
TGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCAT
ATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTG
AGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTT
TCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAA
TCGTCGTGTATTCACTCCAGAGCGATGAAACGTTTCAGTTTGCTCATGAA
AACGTGTAACAAGGTGACACTATCCCATATCACAGCTCACCGTCTTTCAT
TGCCATACGAAATCCGGATGAGCATTCATCAGCGGGCAGATGTGATAACG
CGATAACTTGTGCTTATTTTTCTTTACGTCTTAAAAGCGTATATCCAGCT
GACCGTCTGTACAGTACATGAGCAACTGACTGAATGCTCGAATGTTCTTT
ACGATGCATGTATTATCCACGT
UFO11628.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:05:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vnc-RC | 1137 | CG11989-RC | 129..362 | 9..242 | 1170 | 100 | Plus |
| vnc-RD | 1176 | CG11989-RD | 168..401 | 9..242 | 1170 | 100 | Plus |
| vnc-RA | 1096 | CG11989-RA | 88..321 | 9..242 | 1170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:05:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9973093..9973248 | 87..242 | 780 | 100 | Plus |
| 3L | 28110227 | 3L | 9972923..9973002 | 9..88 | 400 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:05:19 has no hits.
UFO11628.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-12 09:40:58 Download gff for
UFO11628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42455-RB | 149..390 | 1..242 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:38:33 Download gff for
UFO11628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vnc-RA | 80..321 | 1..242 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:47:37 Download gff for
UFO11628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vnc-RA | 80..321 | 1..242 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:47:37 Download gff for
UFO11628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9972915..9973001 | 1..87 | 95 | -> | Plus |
| 3L | 9973094..9973248 | 88..242 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:38:33 Download gff for
UFO11628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9966015..9966101 | 1..87 | 95 | -> | Plus |
| arm_3L | 9966194..9966348 | 88..242 | 100 | == | Plus |
