UFO11629.5prime Sequence
1068 bp (963 high quality bases) assembled on 2012-06-12
> UFO11629.5prime
CAGTCGACATGAAATTCGCCGTCGCCGTTATCTTCACCTTGGCCCTCGCC
ATGGGCGTGCAGTCGTCTGTGATCCCCCTGCTGTCCCAGGTGGCTGGACA
TGGACTGTCCTACACCGCCGTTTCCGGACCCGCTGTGGTGGCCTCTCCCT
GGGCCGTTCCCGCCGCCCACTGGCCTGCTGCCGTGAACGTGGCTTCGTGG
CCTCCGGCAGCGATCCACGCCGCCGCTCCTGCCGTGCTTGCTGCCCCTGC
TCCCGCTGTGGTTGCTGCTCATGCTCCCTCAGTCGTCGTGGCCCCAGTGG
CTCACAGTGGCGTCTACACTGCCCAGACCCGTGGTGCCATTCACACCGCT
CCTCTGGCCGGACACATCCAGTCGGTGGCCTCCATCAATGCCGCTCCCGC
ACCCGGAACCTTGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCC
AGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAG
CCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAA
CGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGG
TCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTA
CGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTC
TGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGC
GGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAAC
GGGGGCGAAGAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAA
ACTCACCCAGGGATTGGCTGAGACGAAAAACATATTTCTCAATAAACCCT
TTAGGGAAATAGCCAGGTTTCACGTAACACGCCACAATTCTTGCGAATAT
ATGTGTAGAAACTGCGAATCGTCTGGTATTCACTCCAGAGCGATGAACGT
TCAGTTGCTCATGAACGGTTACAGGGTGAAACATATCCATACACAGGCCA
CGGTCTTTCATGGCCATA
UFO11629.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:05:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Acp1-RA | 858 | CG7216-RA | 56..461 | 8..413 | 2030 | 100 | Plus |
| CG31904-RB | 3572 | CG31904-RB | 2781..3168 | 15..413 | 1820 | 97.2 | Plus |
| CG31904-RD | 1943 | CG31904-RD | 1152..1539 | 15..413 | 1820 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:05:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7740959..7741357 | 413..15 | 1995 | 100 | Minus |
| 2L | 23513712 | 2L | 7734819..7735206 | 413..15 | 1795 | 97.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:05:23 has no hits.
UFO11629.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-12 09:40:58 Download gff for
UFO11629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acp1-RA | 55..470 | 1..418 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:38:35 Download gff for
UFO11629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acp1-RA | 50..465 | 1..418 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:47:40 Download gff for
UFO11629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acp1-RA | 50..465 | 1..418 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:47:40 Download gff for
UFO11629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7740959..7741363 | 9..413 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:38:35 Download gff for
UFO11629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7740959..7741363 | 9..413 | 99 | | Minus |
