UFO11630.5prime Sequence
1091 bp (976 high quality bases) assembled on 2012-06-12
> UFO11630.5prime
CAGTCGACATGTTCCGCAGCAACTTGGAGGGCAGTGGCGCAGCAGCAGTA
GGTGTTGCAAATCCCCCCTCGTTGGCTCAGTCTGGAAAGATTTTCCAATT
GCAGGATAACTTTTCTGCTTTTCACGCCAGAGGAGGGCTCAACATTCTGG
GCCTGCAGGACATGTATTTGGATACCAGTGGGGCCAACTCGTCGGCCACT
TTGAGTCCGCCCATTACGCCGGTGACCCCTGACCCGTCGACGTCTGCGCA
GTCGACGCACTTCCCTTTTCTGGCCGACAGCGCAGCCACCGCCAATTCGC
TCCTTATGCAGCGACAGTACCACTACCACTTGCTGCTCCAGCAGCAGCAG
CAACTGGCCATGGCGCAGCACCAATTGGCGCTGGCTGCATCAGCGGCAGC
GGCTAGTGCGAGTCACCAGCAAACGGACGAGATTGCGCGATCCTTGAAAA
TCTTTGCGCAGGTGACGACGGGCGCAGCAGAAAATGCGGCTGGCTCGATG
CAGGATGTGATGCAGGAGTTCGCGACCAATGGCTATGCCAGCGATGATCT
CGGTCGCATGTCCTACGGGAGTGCTCCGCCACAGGTGCAAATGCCACCGC
AGCAGCAGCATCAGCAACAGCAGGGGCTGCACCTGCCACTGGGCCGCAAT
CCTGCCCAGCTGCAGACCAATGGCGGCAACTTAATGCCCATTCCACTCGC
CACCCACTGGCTGACAACTACCGGGAGCATCTGAACAACGTGTGGCGAAA
CATGTCGTATATACCAGCCGCTCCCAATACAATGGGTTTGCAGGCCCAAA
CAGCGGCCACTGTGTCCACCAATCTCGGCGTGGAATGGGTCTGGGATTGC
CCGTGCAGGCGAACAGCTGCGCGGAGCTTCCAATCCAGTACATATAACAC
ACACAGTGTACAAGCGTTACACAGCAGCCAAAGAGATCAGCGCACTGCGT
CTTTGGTGAGAATAACACGAACAGAAGCGTTATCATAGCCACCTCAGTGC
GAAATACTTTACGGAGTGCTGTGCCGAACTACGCACCTAGCTGTGCCCAT
CTGCGGGCATCTGGAACTCGGCCACGAATAGTACTGCCCAG
UFO11630.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:05:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nos-RA | 2349 | CG5637-RA | 259..1375 | 4..1089 | 4665 | 96.2 | Plus |
nos-RB | 2292 | CG5637-RB | 303..1318 | 105..1089 | 4175 | 95.9 | Plus |
nos-RB | 2292 | CG5637-RB | 259..303 | 4..48 | 210 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:05:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19157496..19157972 | 4..480 | 2370 | 99.8 | Plus |
3R | 32079331 | 3R | 19158513..19158922 | 478..884 | 1900 | 99.3 | Plus |
Blast to na_te.dros performed 2014-11-28 03:05:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6854 | 582..680 | 157 | 63.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2435 | 576..685 | 156 | 61.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6794 | 582..639 | 155 | 74.1 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1061..1124 | 576..639 | 140 | 68.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6746..6820 | 576..649 | 138 | 66.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6886 | 309..422 | 138 | 61.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6773 | 593..639 | 136 | 76.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6829 | 576..679 | 135 | 60 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..6856 | 576..665 | 134 | 63.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2397 | 579..633 | 131 | 70.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6779..6819 | 582..622 | 124 | 78 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2810..2857 | 308..355 | 123 | 72.9 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1105..1157 | 587..639 | 121 | 69.8 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1073..1147 | 576..649 | 120 | 64 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6782..6893 | 576..680 | 118 | 62.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6814..6860 | 308..354 | 118 | 72.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6781..6892 | 308..422 | 117 | 60.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1536..1587 | 579..627 | 117 | 75 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2397..2448 | 588..639 | 116 | 69.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2439..2490 | 582..633 | 116 | 69.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6880..6938 | 575..633 | 115 | 66.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6716..6769 | 589..641 | 114 | 70.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6779..6842 | 576..639 | 113 | 64.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6827..6923 | 579..674 | 113 | 58.8 | Plus |
UFO11630.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-12 09:40:59 Download gff for
UFO11630.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nos-RA | 254..1356 | 1..1075 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:38:37 Download gff for
UFO11630.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nos-RA | 256..1358 | 1..1075 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:47:42 Download gff for
UFO11630.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nos-RA | 256..1358 | 1..1075 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:47:42 Download gff for
UFO11630.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19157493..19157972 | 1..480 | 99 | -> | Plus |
3R | 19158516..19158985 | 481..935 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:38:37 Download gff for
UFO11630.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14983215..14983694 | 1..480 | 99 | -> | Plus |
arm_3R | 14984238..14984707 | 481..935 | 96 | -> | Plus |