UFO11633.5prime Sequence
1125 bp (995 high quality bases) assembled on 2012-06-12
> UFO11633.5prime
CAGTCGACATGTCTGCGGCCACCAAATTACATAAAACAAGCTGGTGCGCC
CTGCGGCAGCTTCAACAATACAGAACTAAGGCCAACTTTAGTGGCAGTTC
TGCATCGTTAGCCAAGCGGAATGACCTGTTCAACCAGGAGCAACGCCGTC
AACGGGATGCAGTGGGTCGAATCGATAAGATCGAGGTGCGGTATCTGGGA
CTTCCCGAGGATGTCACTCTGGTGATGAACGGCAACATCTCAACGCCCTT
CAATTGCGCCCAGCATCTGAGTGAGGGGCACTGTAAGCGATCGGCACTGG
CCTTGATCGACGGCAGTGTTCCCTGGGATATGCACAGACCCTTGCAGGAA
TCCTGTACTCTGCAGCTGCTTAACTTCCATGTTTCCGAGCCACATGTGGT
CAACAAAGCATTCTGGCGCACTTGCAGCTTTATGTTGGGAGCCGCCTTGA
ACCGCGCTTTCAAGCCGGAGGCCAATCTTCAGCTCCACAGCTTTCCTGGA
CCCAATATCAAATCAGGTAGCTTCGTACACGACATTGTGCTCCAAACCCA
GAACTGGGAGCCAGGAAAAGAAGAGATGCGCGCCCTTTCGGCAGAGATGG
TTAAACTGGCTGCTCAGGATCTGCGCATCGAGCGTTTGGACGTCCAACAG
GATCTGGCCCAGGAGATGTTCAAGGATTCCAAGTATAAGAGCGAACAGTT
GCCCAGCATCTCGCAGCAGACCAATGGAAGGGTCACCTTGTATCGCCTGG
GTGATCATATCGACATCTCACGCGGTCCAATGGTGGCGTCTACCAGCTTT
TTGGGGAAATGCGTCATCTCGGCTGCCCACAAAGTTGCGGAGGAGGGTCC
CTCTGGTGCTTTCTATCGCATTCAGGGCGTTGCACTGCCGTCTGGCTTCC
AACTGAATCATGTTGCATTTGGTTGTATGGAGGAGCGTTCTAGAACCTAG
CCCCGCACGACTGCCCAATGAACCATTGAGGAACAACAACAACTGCAGAG
TCTGCAAGCTTCCTAGAACATTCGGTTGGCCGGCGGGCCCAGGTAGTGGT
CATAATCATATCATAATCATAACCATAATCCAACTAGGCCTAAGGAAATC
TGGGTCATGAACATATGTCTTGAAA
UFO11633.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:05:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL39-RA | 1137 | CG17166-RA | 57..1049 | 8..997 | 4830 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:05:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14998188..14998622 | 942..508 | 2115 | 99.1 | Minus |
| 3L | 28110227 | 3L | 14998961..14999286 | 406..81 | 1615 | 99.7 | Minus |
| 3L | 28110227 | 3L | 14998796..14998896 | 507..407 | 505 | 100 | Minus |
| 3L | 28110227 | 3L | 14999537..14999610 | 81..8 | 370 | 100 | Minus |
| 3L | 28110227 | 3L | 14998069..14998118 | 997..949 | 200 | 98 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:05:39 has no hits.
UFO11633.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-12 09:41:01 Download gff for
UFO11633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL39-RA | 55..1047 | 8..997 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:38:44 Download gff for
UFO11633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL39-RA | 57..1049 | 8..997 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:47:47 Download gff for
UFO11633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL39-RA | 57..1049 | 8..997 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:47:47 Download gff for
UFO11633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14998069..14998118 | 949..997 | 98 | <- | Minus |
| 3L | 14998180..14998622 | 508..948 | 99 | <- | Minus |
| 3L | 14998796..14998896 | 407..507 | 100 | <- | Minus |
| 3L | 14998961..14999285 | 82..406 | 99 | <- | Minus |
| 3L | 14999537..14999610 | 8..81 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:38:44 Download gff for
UFO11633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14991169..14991218 | 949..997 | 98 | <- | Minus |
| arm_3L | 14991280..14991722 | 508..948 | 99 | <- | Minus |
| arm_3L | 14991896..14991996 | 407..507 | 100 | <- | Minus |
| arm_3L | 14992061..14992385 | 82..406 | 99 | <- | Minus |
| arm_3L | 14992637..14992710 | 8..81 | 100 | | Minus |
