UFO11634.5prime Sequence
1072 bp (958 high quality bases) assembled on 2012-06-12
> UFO11634.5prime
CAGTCGACATGCTAAAAATTAACGAAGCAATGCCTGAAATCAAGAGACTT
TGCCTCGCCACCGAGAATAGTCATATCGCAGCCAATGCCATGCTGCTAAC
AAAGATAGATGAACTCAATTCCCAAGTCCTGTCGCAGCGCGCAGAAATCG
AAAACTTGACGAGGGCGGTTAAGACACTTACGGAATTCGTTAAGCAGTCG
ATGAAAACGACCAAGCCGAAGGCGAAGGGAAATCCGGACGATGATTTTCC
AATTATGTATGAGGAGGATCTGGTCGAAGTGAATCACAAGATAAGCCAGG
ACTCCAGGGGGATCTATACGAATTCCATGCGGAAATTCCTGCGCCAGGGA
AGATTAAGCCGCACCATAAGACTCATTTTCTCCGAGGACATCCTTCTGAA
CTACAATATTGATGGGAATCAGAAAAAGAAAAGACTAAAAGATCACGAAC
ATCTGTTTCGTTCGCTTATGAACGCCATCGGTCAGGTGGAACCGACGCTA
CCCTCGGAAAAAGTCTTATTCAAAGCCATGAGATGCGTTAAGAATTGCGC
AGCCAAAAAGAAGGGCAAGGTAGATGATGACCCCTTGTCCGTTTTGAGCG
TGGAGAAATCAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAG
GTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCC
TAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACG
CCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTC
ATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAATTACGC
CCGCCCTGCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCG
ACATGAAGCATCACAAACGCATGATGAACCTGAATCCGCCAGCGCATCAG
CACTTGTCGCATGCGTATTAATATTTGGCCCATGTGAAACCGGGGCGAGA
GTTGTCCATATGCCACGGTTTAATTCGAACTGTGAACTCACCAAGGATGC
CTGAAACGAAAACTATTCTTCA
UFO11634.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:05:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12112-RA | 1117 | CG12112-RA | 170..772 | 9..611 | 3015 | 100 | Plus |
| CG12112-RB | 1096 | CG12112-RB | 164..751 | 9..611 | 2780 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:04:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8559653..8559859 | 317..111 | 1035 | 100 | Minus |
| X | 23542271 | X | 8559426..8559579 | 471..318 | 770 | 100 | Minus |
| X | 23542271 | X | 8559224..8559363 | 611..472 | 700 | 100 | Minus |
| X | 23542271 | X | 8559921..8560023 | 111..9 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:05:00 has no hits.
UFO11634.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-12 09:40:53 Download gff for
UFO11634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12112-RA | 163..777 | 1..618 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:38:19 Download gff for
UFO11634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12112-RA | 163..777 | 1..618 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:47:26 Download gff for
UFO11634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12112-RA | 163..777 | 1..618 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:47:26 Download gff for
UFO11634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8559219..8559363 | 472..618 | 97 | <- | Minus |
| X | 8559426..8559579 | 318..471 | 100 | <- | Minus |
| X | 8559653..8559858 | 112..317 | 100 | <- | Minus |
| X | 8559921..8560030 | 1..111 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:38:19 Download gff for
UFO11634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8453252..8453396 | 472..618 | 97 | <- | Minus |
| arm_X | 8453459..8453612 | 318..471 | 100 | <- | Minus |
| arm_X | 8453686..8453891 | 112..317 | 100 | <- | Minus |
| arm_X | 8453954..8454063 | 1..111 | 96 | | Minus |
