UFO11635.5prime Sequence
1118 bp (986 high quality bases) assembled on 2012-06-12
> UFO11635.5prime
CAGTCGACATGGATTTCGAGAGCAAATACTGCACCAGTCAAGTAAATGGC
ACTATTACCATAACTACGCGCAAAGTCCTTGATGAAAATCTAAAATCCTT
ACTGGATGAGGGAAAGGGCGAGCTGTTTCTCTCGTGTATACCGAGGAATC
ACAGTTGTTCTCCGCGGTGGATTGTGGAAGTGGCCAGCGAACTGGGTGAA
GTTTACATTATGCGCTATAAGATTGATTTTTCGGGAAATTCTCGCGGCTA
CGCCTACTTGCAATATATCAATGTGGACCTCAAGGAATCGGCAATGCAAT
ATCTGCCAATGCGATTCCGACAGCTTTGCATGTGCTTAAGGGTGGAGCCA
TCGACCAACAATCGCGAGCTGGTGCTCAAAAACGTAGAATCGTCGCTTAG
ACCATGGCAAGTGTACCAGGAGATGTTGAAGATACATCCCTTTACCATCG
TTCGAGTCTACGAGTATCAATTAGACCAGTTCTTCTATATATTTGAGTAC
CGCAACAACGACTCGGCCGCAAGTGCCCATCAGAGAGTAAGGAATTCGAT
CAGAAAATTCGGTGAGCATGCGCACATCTCCTGGTTGACTGCGGAGAACA
TCTTGAGCAGAGCCAGCGGTAGCTTCTGTTTTCAACGGGAAGTAAGCCAA
AATCGTACTCGACGCGTTCCTCCCAGACAAAAGGGCTGTTTCAAGTTTGC
AAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATA
ATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGG
TCATGACTAGTGCTTGGATTCTCACCAATAAAAACGCCCGGCGGCAACCG
AGCGTTCTGAACAAATCCAGATGGAGTTCTGAGTCATTACTGATCTATCA
ACAGGAGTCCAAGCGAGCTCGAATATCAAATTACGCCCCGCCCTGCCACT
CATCGCGTACTGTTGTAATCATTAGCATTCTTGCCGAAATGAAGCCATCA
CAAACGCATGATGACCTGAATCGCCAGCGCATCAGCACTGTCGCCTTGGC
TATAATATTTTGCCATGTGAAACGGGGCGAAAAGTTGTTCAATTGGCCAC
GTTAATCAAACTGGTGAA
UFO11635.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:05:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32364-RA | 1046 | CG32364-RA | 73..762 | 9..698 | 3450 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:05:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8209861..8210257 | 698..302 | 1985 | 100 | Minus |
| 3L | 28110227 | 3L | 8210313..8210493 | 301..121 | 905 | 100 | Minus |
| 3L | 28110227 | 3L | 8210558..8210671 | 122..9 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:05:03 has no hits.
UFO11635.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-12 09:40:54 Download gff for
UFO11635.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32364-RA | 1..693 | 9..702 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:38:22 Download gff for
UFO11635.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32364-RA | 73..765 | 9..702 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:47:29 Download gff for
UFO11635.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32364-RA | 73..765 | 9..702 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:47:29 Download gff for
UFO11635.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8209857..8210257 | 302..702 | 99 | <- | Minus |
| 3L | 8210313..8210491 | 123..301 | 100 | <- | Minus |
| 3L | 8210558..8210671 | 9..122 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:38:22 Download gff for
UFO11635.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8203658..8203771 | 9..122 | 100 | | Minus |
| arm_3L | 8202957..8203357 | 302..702 | 99 | <- | Minus |
| arm_3L | 8203413..8203591 | 123..301 | 100 | <- | Minus |
