UFO11636.5prime Sequence
1084 bp (1006 high quality bases) assembled on 2012-06-12
> UFO11636.5prime
CAGTCGACATGTCAAAGCTCCGAATATGTTTCAAACCCGTCAAATCGGGT
CGCGTTTTCGAAGTGTCTTTAGCAGACTTGCAAAAGGATATTGATCCAGA
ACGTTCTTTTCGCAAGTTCCGTCTTATTGCAGAAGATGTTCAAGACCGTA
ATGTGCTCTGTAACTTTCACGGAATGGACTTGACTACGGACAAGTACAGG
TCGATGGTTAAAAAGTGGCAAACACTAATTGAAGCTATTGTCGAAGCAAA
GACTGTAGATGGGTACCTCTTGCGAGTGTTTTGTATCGGATTTACTGCCA
AGGATCAGCAGTCTCAGCGCAAAACATGTTATGCTCAGCAATCGCAAGTC
CGAAAGATTCGTGCTCGCATGACCGACATTATTACTAATGAAGTTAGTGG
TGCCGATCTAAAGCAGCTTGTTAACAAGCTGGCCTTGGACTCGATTGCGA
AAGATATCGAAAAAAGCTGTCAGCGCATATATCCATTACATGATGTTTAC
ATTCGTAAAGTAAAGGTATTGAAGAAACCGCGCTTCGATGTCTCAAAGCT
TCTGGAATTGCATGGCGATGGCGGTGGCAAATCCGTGGAAGCCGTTGTTT
CATCCGAGGGAGCCGTAATCGACCGCCCTGAAGGTTATGAGCCCCCAGTA
CAGGAAGCTGTTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCA
GGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGC
CTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAACG
CCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTC
ATTACTGGATCTATCAACAGGAGTCCAGCGAGCTCGATATCAAATTACGC
CCCGCCTGCCACTCATCGCAGTACTGCTTGTAATTCATAAGCATTCTGCC
GACATGGAAGCATCACAAACGGCATGATGACCTGAATCGCCAGCGGCATC
AGCACCTTGTCGCCTTGCGTAAATATTGCCCATGGTGTAACGGGGGCGAA
AATGTGTCCATATTGGCACGTTTAAATCAAAACA
UFO11636.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:05:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS3A-RB | 854 | CG2168-RB | 122..775 | 9..662 | 3270 | 100 | Plus |
| RpS3A-RF | 1349 | CG2168-RF | 216..831 | 47..662 | 3080 | 100 | Plus |
| RpS3A-RA | 910 | CG2168-RA | 216..831 | 47..662 | 3080 | 100 | Plus |
| RpS3A-RF | 1349 | CG2168-RF | 122..161 | 9..48 | 200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:05:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 66276..66740 | 662..198 | 2325 | 100 | Minus |
| 4 | 1348131 | 4 | 66838..66992 | 201..47 | 775 | 100 | Minus |
| 4 | 1348131 | 4 | 67047..67086 | 48..9 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:05:06 has no hits.
UFO11636.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-12 09:40:55 Download gff for
UFO11636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS3A-RB | 152..811 | 9..670 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:38:24 Download gff for
UFO11636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS3A-RB | 122..781 | 9..670 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:47:31 Download gff for
UFO11636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS3A-RB | 122..781 | 9..670 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:47:31 Download gff for
UFO11636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 67048..67086 | 9..47 | 100 | | Minus |
| 4 | 66270..66738 | 200..670 | 99 | <- | Minus |
| 4 | 66840..66991 | 48..199 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:38:24 Download gff for
UFO11636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 87674..87712 | 9..47 | 100 | | Minus |
| arm_4 | 86896..87364 | 200..670 | 99 | <- | Minus |
| arm_4 | 87466..87617 | 48..199 | 100 | <- | Minus |
