UFO11638.5prime Sequence
1050 bp (955 high quality bases) assembled on 2012-06-12
> UFO11638.5prime
CAGTCGACATGAACTTCTTGAAAAAGCTGTTGCCCCAGGTGGCGACCGAG
GTGCAGCAGCTCAGCCGGTCAGGATTCCACACCAGCTCCGTGTGCTGTCG
CGTGCAATCCGGGCGATACCGCATAACCACAAAGCGAAACAGGCCTCTTA
CCTACGAGATGGCCAATCCGCCGCATTTTATTGGCCACCGCAAATCGTGG
AACTCATGGAACACGTCAACAATGAAGGATGCCCTGCGTCCGTCCCAGAC
CGCCATAGAGGATGTGTTCATCCGCAAGTTTGTCACCGGCACATGGCATG
CCCTCGTCTGCTCCGAGGTCATTATCAAGCGACAGCACAACACCATTAGG
ATCGCGGCCCTTATTCGGCAGGCGATTACACCGCGAAAAATGTACTTCCT
TATTGGTTACACGGAGGAGCTGCTCTCCTATTGGATGCAGTGTCCAGTGA
CCTTGGAACTGCAAACGGTGGGCGATAAAAAGGACGTGGTCTTCAAATAC
ATTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGG
TCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGAT
CCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGG
CAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGG
ATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCC
TGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATG
GAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCA
CCTTGTCGCTTGCGTATATATTTGCCCATGTGAAAACGGGGGCGAGAGTG
TCATATGCCACGTTTAAATCAAACTGGTGAACTCACCAGGATGCTGAACG
AAAAACATATTCTCATACCCTTAGATAGCAGCTTCACGTACCGCAATCTG
CATATATTGTGTAGACTGCGATCGTCTGAATCACTCAGAGCGAGAAACGG
UFO11638.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:05:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS24-RA | 600 | CG13608-RA | 61..555 | 9..503 | 2475 | 100 | Plus |
| CG6182-RA | 1373 | CG6182-RA | 1032..1318 | 503..217 | 1435 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:05:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24162874..24163160 | 503..217 | 1435 | 100 | Minus |
| 3R | 32079331 | 3R | 24163218..24163409 | 216..25 | 960 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:05:55 has no hits.
UFO11638.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-12 09:41:04 Download gff for
UFO11638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS24-RA | 40..539 | 9..511 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:38:55 Download gff for
UFO11638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS24-RA | 61..560 | 9..511 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:47:55 Download gff for
UFO11638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS24-RA | 61..560 | 9..511 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:47:55 Download gff for
UFO11638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24162874..24163160 | 217..503 | 100 | <- | Minus |
| 3R | 24163218..24163407 | 27..216 | 100 | <- | Minus |
| 3R | 24163468..24163485 | 9..26 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:38:55 Download gff for
UFO11638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19988596..19988882 | 217..503 | 100 | <- | Minus |
| arm_3R | 19988940..19989129 | 27..216 | 100 | <- | Minus |
| arm_3R | 19989190..19989207 | 9..26 | 100 | | Minus |
