UFO11640.5prime Sequence
1080 bp (972 high quality bases) assembled on 2012-06-12
> UFO11640.5prime
CAGTCGACATGTCCTACGCCGGCTATAGCCAGCTGCCCAGCGGCAGCGAC
CAGGAGCGCAGGCAGGCGCAGCTCGCGGCCAGCACCTACGACGTGCTACA
GCGGACGACGGACAGTATCCAGCGATCCAACCAGATTGCCATCGAAACGG
AGAACATGGGGGCGGAGGTACTCGGCGAACTGGGCGAGCAGAGGGAGTCG
CTGCTACGCACCACGCGCCGCCTGGAGGACGCCGATCAGGATCTGTCCAA
ATCGAGGGTCATCATTCGGAAGTTGAGCAGGGAGGTGCTCTACAACAAGA
TCATCCTAATCCTGATTATCATTCTGGAGGTGGGCATACTCGTCGGCTTG
CTGGTGCTGAAGTTCGCTCACCTGGCAAGCTTTCTAGACCATTCGTTTGG
CGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATA
ATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCA
CCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATG
GAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCG
ATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTC
ATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCT
GAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCC
ATGGTGAAAACGGGGGCGAAGAGTTGTCCATATTGGCCACGTTTAAATCA
AAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTC
AATAAACCCTTTAGGAAATAGGCCAGGTTTTCACGTAACACGCCACATCT
TGCGAATATATGTGTAGAACTGCGGAAATCGTCGTGTATCACTCCAGAGC
GATGAAACGTTCAGTTGCTCATGAAACGTGTACAAGGTGAACACCTATCC
CATATCACCACCTCACCGTCTTTCATGCCAACGAAATCGATGACCATCAT
CAGGCGGCCAGGATGTGAATAGCCGATAAA
UFO11640.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:06:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44009-RA | 571 | CG44009-RA | 84..449 | 9..374 | 1830 | 100 | Plus |
| CG44009-RB | 977 | CG44009-RB | 510..855 | 29..374 | 1730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:06:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18400009..18400217 | 166..374 | 1045 | 100 | Plus |
| 3R | 32079331 | 3R | 18399792..18399953 | 9..170 | 810 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:06:01 has no hits.
UFO11640.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-12 09:41:06 Download gff for
UFO11640.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| koko-RF | 60..430 | 9..380 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:39:00 Download gff for
UFO11640.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44009-RA | 84..454 | 9..380 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:47:57 Download gff for
UFO11640.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44009-RA | 84..454 | 9..380 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:47:57 Download gff for
UFO11640.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18399792..18399950 | 9..167 | 100 | -> | Plus |
| 3R | 18400011..18400214 | 168..371 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:39:00 Download gff for
UFO11640.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14225514..14225672 | 9..167 | 100 | -> | Plus |
| arm_3R | 14225733..14225936 | 168..371 | 100 | <- | Plus |
