UFO11641.5prime Sequence
1102 bp (978 high quality bases) assembled on 2012-06-12
> UFO11641.5prime
CAGTCGACATGAGCAAACTAGACGATCTGCTGTCCAAAAAGAAGACGGTG
GTGCCCGTCTTGGATCTCAGCCGCAGCAATATTCAGACCGTCGAGGAGTT
CAAACGGCTGCTGGAGAAGGTGCCCGACTACAAGATGCGACCGGTGAAGG
TGCGCGCCGAGGAGATAAAGATCCGGGAGAAGGACTACGCCTTCAAGATG
CCCAAAAAGGAGATGCGAAAGCTGCTGCGAGCCAACGGGGAACGAGAGGC
GATGTACACCTATGCGGATCCGGTGCCCGGTGAAATGAAGGATGTGGTGC
TGATGGAACTGTGTGCGGTGCCCATCGATTGGAAGATGCTGACCACGCTG
AGGCCCAAGAACAAACAGGAGGAGGAATACTTCAGCCGCATGGTTGAGAT
GGGAAAGTTGGAGCTTAAAACCGAGGCTCGCGATCGCCGAGAGTTTGCCC
TAAACAATTGTGTCAAGAAAATCAAGAATAAATCGGGAATTGTGGAAACT
CGACTGATGACCTGTGAGTCCTGCGGCGAGGAAATGTGTTGTGGCAAGAC
TTGCGGCGACTTCAATTACGATCTGTACATTCGGGTTGAGGCCAGGGTGA
TTAAGCCGAAACCGGCACCTTTGTCCTCCAACAAGGCCAAATTAAATGGA
CGCAAAAAGTCATCGGTGGGCGGAACCAAGATCAAGGTCAAAAAGGCATC
AAGCAAAGCCAGCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCC
AGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAG
CCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAC
GCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGT
CATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTAC
GCCCCGCCCTGCCACCCCATCGCAGTACTTTTTGTATTCATTAGCATTCT
GCCGGACATGGAAGCAATCACAAACGGCATGGATGACTTGAATCGGCAAG
CGGCAATCCAGCACCTGGTCGCTGGCATTAAATTTTGCCATGGGTGACGG
GG
UFO11641.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:06:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6216-RB | 1073 | CG6216-RB | 37..741 | 9..713 | 3525 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:06:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11150135..11150670 | 544..9 | 2680 | 100 | Minus |
| 3L | 28110227 | 3L | 11149910..11150080 | 713..543 | 855 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:06:04 has no hits.
UFO11641.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-12 09:41:07 Download gff for
UFO11641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6216-RB | 30..747 | 1..720 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:39:02 Download gff for
UFO11641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6216-RB | 30..747 | 1..720 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:48:00 Download gff for
UFO11641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6216-RB | 30..747 | 1..720 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:48:00 Download gff for
UFO11641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11149904..11150079 | 544..720 | 98 | <- | Minus |
| 3L | 11150136..11150677 | 1..543 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:39:02 Download gff for
UFO11641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11143004..11143179 | 544..720 | 98 | <- | Minus |
| arm_3L | 11143236..11143777 | 1..543 | 99 | | Minus |
