UFO11642.5prime Sequence
1102 bp (990 high quality bases) assembled on 2012-06-12
> UFO11642.5prime
CAGTCGACATGGAGGAGACATATCTGTACGATCCTAATCTGCTGCTAAAG
CTGGACTTTCATCGCAGTCCCGCCAACTTTAAGCCCTTCATATCGGCGGC
CAATCCCGGCGAGCCCTGGATGAAAGTGCGTCCTCTCAAGGACACCGACT
ACGATCGTGGATTCCTGCAGCTGCTCTCGCAACTCACCCATGTCGGCAAT
GTGAATCGTACGCAGTTCTTGACCCGCTTTTCGCAGATGAAAGCCAGTGG
GGACTACTTTGTCACCGTCATTGAGGACACTCGCAAGAATGAGATTATTG
GAGCTGCATCCTTGGTGATCGAGCGCAAGTTCATCCATAACTGTGCTGTG
CGTGGCCGTCTAGAGGATGTGGTGGTCAATGACACGTATCGCGGGAAGCA
ACTGGGAAAACTGATCGTGGTCACCGTATCGCTGCTGGCCGAGGAACTGG
GCTGCTACAAAATGTCGCTGGACTGCAAGGACAAGCTGATCAAGTTCTAT
GAGTCGCTGGGCTATGTGGCCATTCCCGGAAACTCCAACTCCATGACGAT
TCGCTACGATGAGGGGCCAACGCTCAAGCGGAATGCTACCTCAGCCGGCT
CCAGTGGAACAGTGGGCGACTCCTGCCAAACTGTGAGCCTCGATTTTGCC
TCTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGG
TCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGAT
CCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGG
CAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGG
ATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCGCCCT
GCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCGACATGGA
AGCATCACAAACGGCATGATGACCTGATTCGCAGCGCATCAGCACTTGTC
GCTTGCGTATAATATTTGCCATGTGAAACCGGGGGCGAAAAGTTGTCATA
TTGCACGTTTAATCAACTGTTACTACCCAGGATGGCTGAAACGAAAAACA
AT
UFO11642.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:06:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1969-RF | 1341 | CG1969-RF | 134..779 | 8..653 | 3230 | 100 | Plus |
| CG1969-RG | 1495 | CG1969-RG | 288..933 | 8..653 | 3230 | 100 | Plus |
| CG1969-RB | 1341 | CG1969-RB | 134..779 | 8..653 | 3230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:06:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29741150..29741390 | 413..653 | 1205 | 100 | Plus |
| 3R | 32079331 | 3R | 29740567..29740778 | 11..222 | 1060 | 100 | Plus |
| 3R | 32079331 | 3R | 29740840..29740967 | 223..350 | 640 | 100 | Plus |
| 3R | 32079331 | 3R | 29741028..29741091 | 350..413 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:06:07 has no hits.
UFO11642.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-12 09:41:08 Download gff for
UFO11642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1969-RB | 132..785 | 8..661 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:39:04 Download gff for
UFO11642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1969-RB | 134..787 | 8..661 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:48:01 Download gff for
UFO11642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1969-RB | 134..787 | 8..661 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:48:01 Download gff for
UFO11642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29740558..29740778 | 1..222 | 98 | -> | Plus |
| 3R | 29740840..29740967 | 223..350 | 100 | -> | Plus |
| 3R | 29741029..29741090 | 351..412 | 100 | -> | Plus |
| 3R | 29741150..29741399 | 413..665 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:39:04 Download gff for
UFO11642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25566280..25566500 | 1..222 | 98 | -> | Plus |
| arm_3R | 25566562..25566689 | 223..350 | 100 | -> | Plus |
| arm_3R | 25566751..25566812 | 351..412 | 100 | -> | Plus |
| arm_3R | 25566872..25567121 | 413..665 | 97 | -> | Plus |
