UFO11644.5prime Sequence
1090 bp (976 high quality bases) assembled on 2012-06-12
> UFO11644.5prime
CAGTCGACATGAAGGTTGTGTGCAGCATAGCTGTACTATGGATTTGCTTG
ATAACTATGTGGCAATCAGCTGGCCGCGTTAACGCAGAGGGTTGCCTAAA
GCACCACAATCTGACCAGTGCCCAAGTGCAGGCAGTGGCTCCATCCACTC
CCGTTGCGGATGTTCCAGTGGCCGTTAAGTGCTATAGCCGGTGTCTGATC
CAGGATTATTTCGGTGATGATGGGAAAATCGATCTGCAGAAGGTGGGAAA
GCGAGGATCTCAAGAGGACCACGTGATTTTGTCCCAGTGTAAGCAGCAGT
TCGATGGCGTCACCAATCTGGACACGTGCGACTATCCATACCTGATTCTC
CAGTGTTATTTTAAGGGCAAGCAGAGTGGAACTATCGCCTCGGCAAGCTT
TCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATA
ATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGA
CTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGT
TCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACA
GGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATC
GCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCAC
AAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCT
TGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAGTTGTCCATA
TTGGCCACGTTTAAATCAAACTGGTGAACTCACCCAGGATTGGCTGAGAC
GAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCCC
GTAACACGCCACATCTTGCGAATATATGTGTAGAACTGCCGGAATCGTCG
TGTATCACTCCAGAGCGATGAAACGTTCAGTTTGCTCATGGAAACGGTGT
AACAGGGTGAACCTATCCCATATCACAGCTCACCGTCTTTCATTGGCTCG
ATCGAATGACATCATCAAGCGGGCCAGATGTGATTAGGCG
UFO11644.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:06:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp18a-RA | 734 | CG15883-RA | 21..409 | 4..392 | 1930 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:06:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19135406..19135739 | 392..59 | 1670 | 100 | Minus |
| X | 23542271 | X | 19135793..19135848 | 59..4 | 265 | 98.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:06:10 has no hits.
UFO11644.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-12 09:41:08 Download gff for
UFO11644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp18a-RA | 18..415 | 1..401 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:39:07 Download gff for
UFO11644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp18a-RA | 18..415 | 1..401 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:48:03 Download gff for
UFO11644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp18a-RA | 18..415 | 1..401 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:48:03 Download gff for
UFO11644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19135406..19135738 | 60..392 | 100 | <- | Minus |
| X | 19135793..19135847 | 1..59 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:39:07 Download gff for
UFO11644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19029439..19029771 | 60..392 | 100 | <- | Minus |
| arm_X | 19029826..19029880 | 1..59 | 93 | | Minus |
