UFO11645.5prime Sequence
1094 bp (989 high quality bases) assembled on 2012-06-12
> UFO11645.5prime
CAGTCGACATGAACATCGTAAGCACTCAACTAGGGAATAGTTTGTATAAC
TGCGTGCGATCTAATCTAAGATGGCCCTTGTGGACTCGATCACATTTTAC
CTACTATCCTACACGTATGGGAACTGGAAAACGAATGAATATGTTTAACG
CCATTAATAACGCAATGGATTTGGCTCTAGACGAAAACAAATCCGCATTG
TTGTTTGGCGAGGATGTGGGATTCGGTGGAGTTTTTCGGTGTTCAGTAAA
TCTACGGGATAAGTACGGAAGTCAGCGTGTTTTTAATACCCCCTTATGTG
AGCAAGGAATCGCAGGCTTTGCAATAGGTGTGGCTAATACTGGAGCAACC
GCAATAGCAGAAATTCAGTTTGCGGACTATATATTTCCTAGTTTTGACCA
AATAGTTAATGAAGCTGCCAAATATCGATACCGAAGCGGAGGGCTATTTG
ACTGTGGATCCTTAACTTTTAGAGTACCTTGCGGTGCTGTTGGACACGGA
GCACTCTACCATTCCCAAAGTCCGGAAGCATACTTTGCGCATACACCGGG
ACTTCGTGTTGTGGTACCCCGTGGACCGATAAAAGCAAAAGGCCTTATCC
TTGCATGTATTCGTGATCCAAACCCTTGCATTGTTTTTGAGCCAAAAACT
TTATATCGAGCTGCCGTTGAGGAAGTTCCCGCGGAGTACTATACATCACA
GCTAGGCAAAGCTGATATATTGCGACATGGTAAAGACGTCACACTTATTG
GTTGGGGTACACAAGTCCATGTGCTATTAGAAGTAGCAGAAATTGCAAAA
TCAACGTTAAATATAGATTGTGAAGTTATAGACTTGGTCTCCATTTTGCC
GTGGGACGCTATTACCATTTGCACCTCTGCTAAAAAACCGGACGAGTTAT
ATTGCGCATGAAGCTCCATTAACACAAGATTTGATCAGACTAGCATCCTA
CATCAGGAAAAGTGTTTTTTGCACCTGAAGCAACCGTTAAACGGGTGGCT
GTGTAACTCGTTTCCCATGTCTTCGAGCTTTAATGCCCGATAACACCGAG
TTGTCAGCTATAATGATATTGGTACTTGCAAGCCTTCCGAACAT
UFO11645.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:06:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17691-RE | 1221 | CG17691-RE | 85..1168 | 9..1071 | 4865 | 97.7 | Plus |
| CG17691-RC | 1244 | CG17691-RC | 108..1191 | 9..1071 | 4865 | 97.7 | Plus |
| CG17691-RF | 479 | CG17691-RF | 85..392 | 9..316 | 1540 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:06:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 1594945..1595195 | 316..566 | 1255 | 100 | Plus |
| 2R | 25286936 | 2R | 1590654..1590885 | 9..240 | 1160 | 100 | Plus |
| 2R | 25286936 | 2R | 1595765..1595987 | 563..785 | 1115 | 100 | Plus |
| 2R | 25286936 | 2R | 1596036..1596128 | 783..875 | 465 | 100 | Plus |
| 2R | 25286936 | 2R | 1590939..1591017 | 238..316 | 395 | 100 | Plus |
| 2R | 25286936 | 2R | 1596195..1596320 | 882..1001 | 290 | 91.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:06:13 has no hits.
UFO11645.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-12 09:41:09 Download gff for
UFO11645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17691-RE | 86..1182 | 2..1077 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:39:09 Download gff for
UFO11645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17691-RC | 108..1198 | 9..1077 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:48:06 Download gff for
UFO11645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17691-RC | 108..1198 | 9..1077 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:48:06 Download gff for
UFO11645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 1595766..1595984 | 564..782 | 100 | -> | Plus |
| 2R | 1596036..1596128 | 783..875 | 100 | -> | Plus |
| 2R | 1590648..1590883 | 2..238 | 98 | -> | Plus |
| 2R | 1590940..1591017 | 239..316 | 100 | -> | Plus |
| 2R | 1594946..1595192 | 317..563 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:39:09 Download gff for
UFO11645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ArmU | 1178965..1179200 | 2..238 | 98 | -> | Plus |
| ArmU | 1179257..1179334 | 239..316 | 100 | -> | Plus |
| ArmU | 1183263..1183509 | 317..563 | 100 | -> | Plus |
| ArmU | 1184083..1184301 | 564..782 | 100 | -> | Plus |
| ArmU | 1184353..1184445 | 783..875 | 100 | -> | Plus |
