UFO11647.5prime Sequence
1071 bp (956 high quality bases) assembled on 2012-06-12
> UFO11647.5prime
CAGTCGACATGTCGATATCAGCTTCGCACCCGTGCGGGTTAAACGCTGAT
GGCACAGCCACCCAGTATAAAGAATCTACGGCCACCATACAAACTTCTGG
TCTTCAGTCATCACCTAGGTCCTTTCTACCAGAGCGAGAGGATACGTTAG
AGTACTTCATAAAGTTTCCGAAGCCTTCATCTAAAAATGAGTTTGTACTA
GCTAAGGACCATGATGGCGAGGACAGCCACGTGCCCATTGTCATGCTGTT
GGGGTGGGCGGGCTGTCAGGATCGATACCTCATGAAATACTCAAAAATTT
ACGAGGAGCGGGGCTTAATTACTGTGCGATACACGGCTCCGGTAGACAGC
CTATTTTGGAAGCGATCTGAAATGATTCCTATCGGCGAGAAAATCCTTAA
ACTAATCCAGGACATGAATTTTGACGCCCATCCACTAATATTTCACATAT
TTTCCAATGGCGGAGCCTACTTGTACCAACATATTAATTTAGCTGTGATC
AAGCACAAGTCTCCGCTGCAAGTTCGCGGCGTGATTTTTGACTCTGCTCC
TGGGGAGCGTAGGATAATAAGCCTGTATCGCGCCATTACAGCCATCTATG
GTAGGGAAAAACGCTGCAACTGTTTGGCCGCACTGGTTATAACCATTACA
CTCAGTATTATGTGGTTTGTGGAGGAATCAATTTCTGCCTTGAAAAGCCT
ATTCGTGCCGTCTTCGCCAGTACGCCCCAGTCCATTTTGCGACCTTAAAA
ACGAAGCCAATAGATACCCACAGCTTTTTCTGTATTCGAAAGGTGACATT
GTGATTCCCTATCGAGATGTGGAAAATTTATTCGTCTTAGACGCGATCAG
GTATTCAGTATCGTCAGTATGCTTTGAGATGCCGAGCACGTTAAGATTTA
CACCAAATATCCAAGCAGTACGTCCAGTGTGTGTGTAATTTTATCGGAAC
TGCATGACATTCCTCCTCTCAGAGCTTGTAATTCTGATCATCGAAGTGGT
CTCGGTTAACTAAATACGATGCAAGCTTCCTAAACATTCGTTGGCCGCGG
GCCAGGGTAAGTGCCAAATCT
UFO11647.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:05:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8245-RA | 1316 | CG8245-RA | 145..1173 | 9..1020 | 4670 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:05:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5669058..5669420 | 313..675 | 1815 | 100 | Plus |
| 2R | 25286936 | 2R | 5668694..5668998 | 9..313 | 1525 | 100 | Plus |
| 2R | 25286936 | 2R | 5669479..5669784 | 673..971 | 1165 | 97.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:05:45 has no hits.
UFO11647.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-12 09:41:02 Download gff for
UFO11647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8245-RA | 126..1114 | 1..979 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:38:49 Download gff for
UFO11647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8245-RA | 136..1124 | 1..979 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:47:51 Download gff for
UFO11647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8245-RA | 136..1124 | 1..979 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:47:51 Download gff for
UFO11647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5668685..5668998 | 1..313 | 98 | -> | Plus |
| 2R | 5669059..5669419 | 314..674 | 100 | -> | Plus |
| 2R | 5669481..5669794 | 675..979 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:38:49 Download gff for
UFO11647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1556190..1556503 | 1..313 | 98 | -> | Plus |
| arm_2R | 1556564..1556924 | 314..674 | 100 | -> | Plus |
| arm_2R | 1556986..1557299 | 675..979 | 96 | | Plus |
