UFO11648.5prime Sequence
1099 bp (988 high quality bases) assembled on 2012-06-12
> UFO11648.5prime
CAGTCGACATGTCCAGCCTGCGACCCGAGGAGGCCCGAAAACTGGCCACC
GCCGCCTCCGTTTCGCCGCTGAGCAATTGCCAATTTTGCGGCGTGGTAAT
CAGCTCGATTGCCGACGAGCAGAAGCTAGAGTTTACCAACAAATACAAGG
GAAGCTGCACGCTGCTCTGCAGCTACGATTCCCAGGGTGTCGTCCTCCGT
GTTGTGTCAGACGACGACCGGAGCCACGTGCTCAAGGAGTACATGATAGC
CGCCGATACGGATGCCGCCCAAATGGGACGAAGGAGTTATGCCGTTTCCC
TGGACGCCGACAATCTAGTGCTGAGGTTTGCCAGCGAGCAGGACCAGCAG
CTCTTCCGCAAAGTGGTGGAGAACGTGAAGCACTTGAGACCCAAGTCCGT
GTTCTCGCAGCGCACTGAGGAGTCGTCCGCCTCGCAGTACTTCCAGTTCT
ACGGCTACCTCAGTCAGCAGCAGAACATGATGCAGGACTATGTAAGGACA
AGCACGTATCAGCGGGCCATTCTAGGCAATGCTGTGGATTTTCAGGACAA
GATCGTCCTGGATGTGGGCGCCGGCTCGGGCATTCTCTCCTTCTTTGCCG
TGCAGGCGGGAGCTGCCAAAGTGTACGCCATTGAGGCTTCCAACATGGCC
CAGTACGCCCAGCAGCTGGTTGAGTCCAACAATGTGCAGCATAAGATCTC
TGTGATACCGGGGAAGATCGAGGAGATCGAGCTGCCCGAGAAAGTGGACG
TTATCATATCAGAGCCTATGGGCTATATGCTGTACAACGAGCGCATGTTG
GAGACCTATCTGCATGCCAGAAAGTGCTCAAGCCGCAAGGAAAGATGTAC
CCCACGCACGGCGACTTGCACATAGCACCCTTTCGACGAATCGCTCTACT
CGGAACAATATAACAGGCAACTTCTGGTACCAGTCGCGGTCCACGGCGTG
ACCTTACCACGCTGCACAAAGAGGGCATGAAGGAGTACTTCGACGTCAAT
TGTGACACTCGACATCCGCATATGCATGCAGTCGTGCGACCGTGTGCGAC
TTTCCTCACGATAAGGAGGACGATCTTGCATTTGTATAAGCATTCCCCC
UFO11648.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:05:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Art4-RB | 3071 | CG5358-RB | 380..1486 | 7..1098 | 4970 | 97.7 | Plus |
| Art4-RA | 2701 | CG5358-RA | 380..1486 | 7..1098 | 4970 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:05:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9984628..9985418 | 991..208 | 3630 | 98.7 | Minus |
| 3R | 32079331 | 3R | 9985478..9985681 | 210..7 | 1020 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:05:48 has no hits.
UFO11648.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-12 09:41:03 Download gff for
UFO11648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Art4-RA | 369..1481 | 1..1099 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:38:50 Download gff for
UFO11648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Art4-RA | 374..1486 | 1..1099 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:47:52 Download gff for
UFO11648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Art4-RA | 374..1486 | 1..1099 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:47:52 Download gff for
UFO11648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9984535..9985415 | 211..1074 | 97 | <- | Minus |
| 3R | 9985478..9985687 | 1..210 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:38:50 Download gff for
UFO11648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5811200..5811409 | 1..210 | 99 | | Minus |
| arm_3R | 5810257..5811137 | 211..1074 | 97 | <- | Minus |
