UFO11649.5prime Sequence
1081 bp (943 high quality bases) assembled on 2012-06-12
> UFO11649.5prime
CAGTCGACATGATGGCCAAGTGGCTCCTTGGCCTTTGGCTGGCGATCCTG
CTAGTGGATCGACCCGGGGCTAAAGCTTATCGATCAGGCAGTGGCTACCA
CAGCGAGCAGTCGGAACCAGTTGGCTTATCAGCAACAGGGAACGCACACT
CGAGTTACGGAGGCGACCAGCAGCAGCCTATTTACCATCGGGATTCGGCA
TGCCCGCCGCATTTTACGGGTCTGGTTGCATATCCCCACGACTGTCATCG
CTATGTGAACTGCTTCGATGGCAGCCCCACCATTCAGACGTGTTCGCCCG
GAACTCTGTTCAATGACAGGACCCAGGTGTGCGATCATCCCAGCAATGTG
GTTTGCCCTTCAGCGGAATCTGCATCTACTCGACTGGGAAGACTTAGGCA
ATTAGATAGTGAACCCAAGTGTCAACCGGGAGTGAATGGATTGCAACCGC
ATCCTTCGGATTGCAGCAAGTTTCTTAACTGCGCCAATGGTCAAGCTTTT
ATTATGGACTGCGCACCAGGAACTGCTTTTAGTCCAGCATCACTGGTATG
TGTGCACAAGGATTTGGCCAAATGCGGATCGGGAACTGGTGCAGTACGAG
ATGATACCTCCGGCACCGGCTACCCTGCGTTGCCTTTTGATGACTTGGGC
TGTCCACCCGGTACACGTGGGCTTCGTCCACATCCGCACGACGTGCACAA
GTATTTGAGGTGCGGAATTGGGGTTAAGCCTCACGTGGAACAGTGTCCAC
GGGGCCACATCTTCGATGGCTCCTCTTCGGTATGTGTGTATTCTGACTCC
CCTCGGACCTCCTCTTCCTCCTTCACGTCGGCTGAGATTCAGTCAACTAT
CTCTTGTGTCCAGTGGGAGCCGTTGGCCAATTTGTTCATCCCTTTGATCA
AACAAATTCCTTAGTGTAAGGATGGTAAATCGGCTGTGCAACCTGCAACC
TATATGGTGGTTTAGCATATGGAGGCGCTACTGTCAGTAAAAGCACAATT
AGCTTAACGACTATGTTCCAATAATTATCCTCCGAAATCAGCTATGATAT
CACTTATTCTTATGGCTGTTCTGTAACTCAC
UFO11649.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:06:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tequila-RG | 8628 | CG4821-RG | 137..1211 | 9..1073 | 4850 | 97.5 | Plus |
| Tequila-RF | 7389 | CG4821-RF | 137..1211 | 9..1073 | 4850 | 97.5 | Plus |
| Tequila-RC | 2263 | CG4821-RC | 137..1211 | 9..1073 | 4850 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:06:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9075064..9075623 | 60..619 | 2785 | 99.8 | Plus |
| 3L | 28110227 | 3L | 9075671..9075866 | 618..813 | 965 | 99.5 | Plus |
| 3L | 28110227 | 3L | 9076020..9076260 | 814..1047 | 620 | 90.5 | Plus |
| 3L | 28110227 | 3L | 9074779..9074829 | 9..59 | 255 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:06:22 has no hits.
UFO11649.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-12 09:41:11 Download gff for
UFO11649.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tequila-RE | 129..1205 | 1..1069 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:39:15 Download gff for
UFO11649.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tequila-RA | 129..1205 | 1..1069 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:48:11 Download gff for
UFO11649.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tequila-RC | 131..1207 | 1..1069 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:48:11 Download gff for
UFO11649.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9074773..9074829 | 1..59 | 93 | -> | Plus |
| 3L | 9075064..9075622 | 60..618 | 99 | -> | Plus |
| 3L | 9075672..9075866 | 619..813 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:39:15 Download gff for
UFO11649.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9067873..9067929 | 1..59 | 93 | -> | Plus |
| arm_3L | 9068164..9068722 | 60..618 | 99 | -> | Plus |
| arm_3L | 9068772..9068966 | 619..813 | 99 | -> | Plus |
