UFO11650.5prime Sequence
1097 bp (1005 high quality bases) assembled on 2012-06-12
> UFO11650.5prime
CAGTCGACATGTCATACCACTTTACTTCTTCGGCAAAACAGAATGTTACA
TTACAATCATGTAAGGAAGAGAATTTATTATCACTAGAAGAGGAGGACTC
CGACGAGGAACGCGAGCTAACCAACCTTAATTGGCTTTTGAGAAATCAAA
ATTTAACTTGGCCGAAAACCATTGATTACAACCCAACCGAAATTTTAAAT
TCGAAAAGGAACACAGAACCAACTCACAAGTCAAGAGTCCATGATAAACA
AATCAAAATGTTTTATTCTACTCGTGAAAACACAGATAAAATATCACATA
TAATTTTAGAGGCTAATGCGCAAAAATCTATAACAAAGAGACCAACTGCA
TCAGAACGCTTTGAAATTTTCGTCAATAAAATCAAAAGAGACTTAACAGA
ATATGAAAAGTTGGCTAGCAAGTATGAAACCGACGTGACCGAGAAACCGC
CTTTTAATTATTCACATATAATAGGAATGGCTATGTTACAAAATGGGCGA
ATAACTTTACAACAATTATGTTCTTGGATAGAGGCCAAGTTTGCATTTTT
TAGAGTTCGAAAGAAATGGAATAATTCCATTAGGCATAACTTATCATTAC
ACCATTGCTTTCGTAACCGAAAAAGAGAAGAAAGGGGAAAAGGTGGTTAC
TGGGAGCTGGGGGTCGACCCAAAAAAGTGTGACCGGAAACGAATTCGAAA
TAGGAAAATTTTTCATCCAACGCAAAATCAAACTGCTAAGTTACAGTATG
AACACTTAACAGAAATACAACAAGCAAAATCTGCTCGAAAAAATCATTCA
AGACACATTAAAAAATCGAAGACAAGTAGTCTTCCAGAAACATCTGAAGC
AAATATATTTAATGTCGTGCCCCATAAAAAACACAATATAGCTGATGAAA
ATGATGGGCAACGTCAGTTACAAACAATAAATAAAGATGACATTTTAAAA
GAAGTCTGAGCTGACACTATTGTATCAAGTACTGATCATTTTAACAGAAT
CTCAAAACTAAACTGTTTATCGCAAAAGACGGATACTACAACACCCCATT
CTGCGAAAAGAATTCTGCACATCCATATTTCAATTCGGAATGACACC
UFO11650.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:06:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32006-RA | 1684 | CG32006-RA | 83..1188 | 9..1097 | 5065 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:06:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 152439..152914 | 573..1039 | 2005 | 97.7 | Plus |
| 4 | 1348131 | 4 | 151751..152130 | 9..388 | 1900 | 100 | Plus |
| 4 | 1348131 | 4 | 152193..152378 | 387..572 | 930 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 03:06:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 1093..1318 | 905..671 | 133 | 56.7 | Minus |
UFO11650.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-12 09:41:12 Download gff for
UFO11650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32006-RA | 74..1168 | 1..1081 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:39:16 Download gff for
UFO11650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32006-RA | 77..1171 | 1..1081 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:48:13 Download gff for
UFO11650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32006-RA | 77..1171 | 1..1081 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:48:13 Download gff for
UFO11650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 151745..152130 | 1..388 | 99 | -> | Plus |
| 4 | 152195..152378 | 389..572 | 100 | -> | Plus |
| 4 | 152439..152920 | 573..1044 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:39:16 Download gff for
UFO11650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 172371..172756 | 1..388 | 99 | -> | Plus |
| arm_4 | 172821..173004 | 389..572 | 100 | -> | Plus |
| arm_4 | 173065..173546 | 573..1044 | 97 | | Plus |
