UFO11653.5prime Sequence
1062 bp (962 high quality bases) assembled on 2012-06-12
> UFO11653.5prime
CAGTCGACATGACAATCTACGAGCAGATCAGTGATCAGTTTTGCCGCGTT
GTGCACACCAACCTCAAGATACCACTATCCTATTGCGAAACACGCTCACA
CTGGAAATTCTCGAAAAGTATCGATACAATGATATTTTTCTATACCCTTA
GCTTTGGTATCCTTCGAGTGATACTACATTTTATAGATTTGGTGAACATT
TACTTCAGAGGGATGCGCTTGAGGCGGCCAAGCAATCTCTTGATCTTGAG
GGGCGAGAATTCGCGGGGCTTTCGAGTTCTCAAGCACCTTTTAATGCTGA
AAGCATGGATATTAGTCATATACGGCATGGTATTCATCAAGCCGCATTAC
ATCAATCCTTTCGTTGTGCTTTCTATCATCATTTTGACCATCGATGTGTT
TGTATTGGTGTTGGATATCCTGCGAAAGGCCAGGATACCTCTTGACCGCA
GGGTGACCCTTTGGGAAATGATGCTCAACTTGTGCTGTGTTTTTTACGTA
CAGTGGATTCTCAAGCAACAGATCCAGTATGCAAGCTTTCTAGACCATTC
GTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATA
ATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGA
TTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATC
CAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCG
AGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTG
TAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGAT
GAACCTGAATCGCCAGCGGCATCAGCACTTGTCGCCTTGCGTATATATTT
GCCCATGGTGAAACGGGGGCGAGAGTTGTCATATTGCCACGTTTAAATCA
AACTGGTGAACTCACCAGGATGGCTGAAACGAAAAACTATTCTCATAACC
TTAGAATAGCAAGTTCACGTACAGCACATCTGCAATATTGGTAGACTGCG
ATCGTCTGGATA
UFO11653.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:06:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43075-RA | 757 | CG43075-RA | 78..600 | 8..530 | 2615 | 100 | Plus |
| CG33252-RA | 819 | CG33252-RA | 101..609 | 16..524 | 1345 | 84.7 | Plus |
| CG32588-RA | 677 | CG32588-RA | 77..461 | 4..403 | 570 | 76.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:06:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15220428..15220622 | 530..336 | 975 | 100 | Minus |
| X | 23542271 | X | 15220693..15220858 | 335..170 | 830 | 100 | Minus |
| X | 23542271 | X | 15220937..15221099 | 170..8 | 815 | 100 | Minus |
| X | 23542271 | X | 16896690..16896846 | 334..178 | 500 | 87.9 | Minus |
| X | 23542271 | X | 16896425..16896613 | 524..336 | 450 | 82.5 | Minus |
| X | 23542271 | X | 16896935..16897087 | 168..16 | 450 | 86.3 | Minus |
| X | 23542271 | X | 15206397..15206560 | 167..4 | 430 | 84.1 | Minus |
Blast to na_te.dros performed 2014-11-28 03:06:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| blood | 7410 | blood BLOOD 7410bp | 4576..4639 | 191..129 | 110 | 65.6 | Minus |
UFO11653.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-12 09:41:13 Download gff for
UFO11653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43075-RA | 1..525 | 9..531 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:39:20 Download gff for
UFO11653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43075-RA | 70..604 | 1..536 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:48:17 Download gff for
UFO11653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43075-RA | 70..604 | 1..536 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:48:17 Download gff for
UFO11653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15220693..15220857 | 171..335 | 100 | <- | Minus |
| X | 15220937..15221102 | 1..170 | 97 | | Minus |
| X | 15220428..15220622 | 336..530 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:39:20 Download gff for
UFO11653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15114461..15114655 | 336..530 | 100 | <- | Minus |
| arm_X | 15114726..15114890 | 171..335 | 100 | <- | Minus |
| arm_X | 15114970..15115135 | 1..170 | 97 | | Minus |
