UFO11654.5prime Sequence
1049 bp (950 high quality bases) assembled on 2012-06-12
> UFO11654.5prime
CAGTCGACATGGCTTACTTCCAGTTCCTCAGCGTTGCCTCCAGCTTGCTT
CTACTCCTGGCTCCCACCTGGGCAGGTCTGATTGCTCAGCCGACCATCAC
CTATGCTGGCAATGAGCACGCGGTGGCCCACACCCAACAGAATGTAGTAA
GGAGCTTCGATGGCACCGTCTCCCACTACGCCAAGTCGCTGGCCACGCCC
TACTCGCAGGTCCACAAGCAGGACACGCGGATCAGCAACAATGTCTACCA
GCCGGCTGTGGCCAAGACCTTCAGTTATGCTACAGCTCCAGCTCCGGTTT
ACACGCACCAGGCTCATCAGGAACCAAAAAATCTGTTTACTCAGGCATCG
CCAGTTTACCAGCAGGATGCTCATGTCCAGACTCCATCGGTTTACCAGCA
GGCTGCTCATGTCCAGACTCCATCGGTTTACCATCAGCCCGCTCAGGTGC
AGAGCTACCACCAACCTGGTCATGTGGAGGCACCTTCTGTTTACCAACAG
AACGCCCACTACAGCCACCAGCCTGCTGTCATCCACTATTCTCCGGCGGA
GACCGTCTCCCACATGAGCTTCGATGGTTTCGGTACCCACTACGGATTTG
CAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCAT
AATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTG
GTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAAC
CGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCT
ATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCC
ACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGTAGC
ATCACAAACGCATGATGATCTGATCGCAGCCGCATCAGCACTTGTCGCTT
GGCGTATATATTTGCCAATGTGAAACGGGGCGAGAGTGTCATATGCCACG
TTAATCAACTGTGACTCACCAGAATGCCTGAAACGAAACAATTCCCATA
UFO11654.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:06:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7548-RA | 678 | CG7548-RA | 12..607 | 4..599 | 2965 | 99.8 | Plus |
| CG7548-RA | 678 | CG7548-RA | 362..425 | 390..453 | 230 | 90.6 | Plus |
| CG7548-RA | 678 | CG7548-RA | 398..461 | 354..417 | 230 | 90.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:06:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7505611..7506206 | 599..4 | 2965 | 99.8 | Minus |
| 3L | 28110227 | 3L | 7505757..7505820 | 417..354 | 230 | 90.6 | Minus |
| 3L | 28110227 | 3L | 7505793..7505856 | 453..390 | 230 | 90.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:06:36 has no hits.
UFO11654.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-12 09:41:14 Download gff for
UFO11654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7548-RA | 9..611 | 1..604 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:39:22 Download gff for
UFO11654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7548-RA | 9..611 | 1..604 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:48:19 Download gff for
UFO11654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7548-RA | 9..611 | 1..604 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:48:19 Download gff for
UFO11654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7505607..7506209 | 1..604 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:39:22 Download gff for
UFO11654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7498707..7499309 | 1..604 | 99 | | Minus |
