UFO11659.5prime Sequence
1109 bp (968 high quality bases) assembled on 2012-06-12
> UFO11659.5prime
CAGTCGACATGTTCAAGTTCTTCGCCGTCGCCCTCTTCGCACTGATTGCC
TGCGTGGCCGCCAAGCCCGGAATCGTGGCTCCTCTGGCCTACTCCGCACC
TCTGGTGGCTGCTGCTCCGGCGGCTGCGGTTTACAGCCGGGAATACCACG
GAAATTTTGCGGCTCCCTACGTGGCATCTCCCTATGTGGCTTCTCCCTAC
GTGGCTTCTCCCTACGTCGCTTCCCCTTACGTGGCGTCTCCGTATGTGGC
ATCTCCCTACGTTGCCGCCCCCTACACCGCTCCTCTGCTGCTGAAGAAGG
CAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCAT
AATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTG
GTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAAC
CGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCT
ATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCC
ACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAG
CCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTT
GTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGT
TGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGA
TTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGC
CAGGTTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACT
GCCGGAAATCGTCGTGTATTCAACTCCAGAGCGATGAAAACGTTTCAGTT
TGCTCATGGAAAACGTGTTAACAGGGTGAACACCTATCCCATATCACCAG
CTCCACCGTCTTTTCATTGTATACGAATTCGGATGACATTCATCAAGGCG
GGCCAGAATGGAATTAAGCGATAAACTGTGCTATTTTTCTTTACGCCTTA
AAAGCGTAATATCCAGCTGACGGTTGTTAAGTACTGGACAACTTGACCTG
AATGCCTCA
UFO11659.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:06:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13069-RA | 420 | CG13069-RA | 46..336 | 9..299 | 1455 | 100 | Plus |
| CG13051-RA | 388 | CG13051-RA | 36..124 | 9..97 | 355 | 93.3 | Plus |
| CG13051-RA | 388 | CG13051-RA | 126..191 | 165..230 | 210 | 87.9 | Plus |
| CG13051-RA | 388 | CG13051-RA | 126..197 | 210..281 | 195 | 84.7 | Plus |
| CG13051-RA | 388 | CG13051-RA | 124..176 | 223..275 | 190 | 90.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:06:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16265430..16265720 | 9..299 | 1455 | 100 | Plus |
| 3L | 28110227 | 3L | 16264977..16265065 | 97..9 | 355 | 93.3 | Minus |
| 3L | 28110227 | 3L | 16264910..16264975 | 230..165 | 210 | 87.9 | Minus |
| 3L | 28110227 | 3L | 16264904..16264975 | 281..210 | 195 | 84.7 | Minus |
| 3L | 28110227 | 3L | 16264925..16264977 | 275..223 | 190 | 90.6 | Minus |
Blast to na_te.dros performed 2014-11-28 03:06:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tc1 | 1666 | Tc1 TC1 1666bp | 1435..1467 | 1019..1051 | 111 | 81.8 | Plus |
UFO11659.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-12 09:41:10 Download gff for
UFO11659.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13069-RA | 39..336 | 1..299 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:39:12 Download gff for
UFO11659.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13069-RA | 39..336 | 1..299 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:48:09 Download gff for
UFO11659.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13069-RA | 39..336 | 1..299 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 03:48:09 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 21:39:12 has no hits.
