UFO11665.5prime Sequence
1064 bp (970 high quality bases) assembled on 2012-06-12
> UFO11665.5prime
CAGTCGACATGGCACCCAATCGCAAGGACGGAAAGAAGAATATTACGGAA
AAGCAGGAAGCGAAAATGTTAGCCGAAGCTGGTGGAAAATCGGCCAGTGA
TAGCGATGCGAGCGATACCGAATGGCAAATGGTTCAATTTGTGGACGATC
CGAATGTCCTGCGAGTTGCGATCATAGCTTGTCCTGAGGTGACCTTGGGC
TTTTTACTGTGTGGCGTTGGCTATCAGAAGGATAGATTTCGCAACTATAT
GATGGTTGAGAGCGAGACGCCACAAGAGGATGTGGAGCAGTTCTTTCTCA
CGGTTTACAGGAGATCCAATATCGGCATTGTCATCATCGACTACGATACG
GTGAAAAGGCTTCGTACCATGATGCAACGATGTTCTCAGCTGCTTCCCGT
CCTGGTCACGGTGCCCAACAAATCCTCACTGATCACGTACTTGGACAAAA
AGGAGCGAAATCGGCGACTTCGCCAGCGTGATGCCTATGCAAGCTTTCTA
GACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCA
TAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAG
TGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTG
AACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAG
TCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAG
TACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAAC
GGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCG
TATATATTTGCCCATGGTGAAACGGGGGCGAGAGTTGTCCATATTGCCAC
GTTTAATCAAACTGTGAACTCACCCAGGATGCTGAAACGAAAACATATCT
CATAACCCTTTAGGAAATAGCAGTTCACGTAACACCGCCCATCTGCAATA
TATGTGTAGACTGCGATCGTCTTTATCATCAAGCGATGAACGGTCAGTTG
TCATGACGGTAACA
UFO11665.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:07:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15719-RD | 747 | CG15719-RD | 70..549 | 9..488 | 2400 | 100 | Plus |
| CG15719-RC | 717 | CG15719-RC | 40..519 | 9..488 | 2400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:07:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13004153..13004377 | 488..264 | 1125 | 100 | Minus |
| X | 23542271 | X | 13004567..13004744 | 186..9 | 890 | 100 | Minus |
| X | 23542271 | X | 13004430..13004508 | 264..186 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:07:05 has no hits.
UFO11665.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-12 09:41:21 Download gff for
UFO11665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15719-RB | 1..489 | 9..498 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:39:43 Download gff for
UFO11665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15719-RC | 33..528 | 1..498 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:48:34 Download gff for
UFO11665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15719-RC | 33..528 | 1..498 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:48:34 Download gff for
UFO11665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13004153..13004376 | 265..488 | 100 | <- | Minus |
| X | 13004430..13004508 | 186..264 | 100 | <- | Minus |
| X | 13004568..13004750 | 1..185 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:39:43 Download gff for
UFO11665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12898186..12898409 | 265..488 | 100 | <- | Minus |
| arm_X | 12898463..12898541 | 186..264 | 100 | <- | Minus |
| arm_X | 12898601..12898783 | 1..185 | 97 | | Minus |
