UFO11666.5prime Sequence
1045 bp (955 high quality bases) assembled on 2012-06-12
> UFO11666.5prime
CAGTCGACATGAGACCCGAATTCGTCCTGGCCTTTGGTTTGGTTGTCCTC
GTGGCGACCGTTTATGGTGGCACCGACTCATCCTCGAGCGACTCGTCCTC
TTCCACATCACCCACTTCCAATTCATCGACTCCATCGACTTCCAGCTCAA
GTTCGACACCCAGCTCTTCGTCCTCCACCTCAACTCCGTCCAGCAATAGC
ACTACGTCTACTTCGTCCTCCACTCCTAGCAGCTCTTCTTCCACTTCGCC
CACTTCCTCCACCTCATCGACGACTGCCACAACCACGGCCCCCTCCACGT
CCAGCGACACGTCCTCCTCCTCCACGAGCTCCGACAGCGAGGAGGTGGAC
AGGCTGAGGCGCAGGCTTCGCAGGCTCCGGCGGCTGAGGCGTCAGGAGAG
GCGCCAGGAGATTCGCCGGGAGAGGCAGCAGGAAAGGCGCCAGCAGAGTC
GTGCTGGAAGAAGGCGCCAACGTAGGGGAGCAAGCTTTCTAGACCATTCG
TTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAA
TCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGAT
TCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCC
AGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGA
GCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGT
AATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATG
AACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATATATTT
GCCCATGGTGAAAACGGGGCGAGAGTGTCCATATGGCCACGTTTAAATCA
ACTGTGAAACTCACCAGGATTGCTGAACGAAACATATCTCATAACCCTTT
AGGGAAATAGCAAGTTTCACGTACACGCCAATCTTGGATTATGTGTAGAC
TGCGATCGTCTGCATTCATTCGACGATGAACGTTTCAGGTTGCTC
UFO11666.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:07:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34105-RA | 574 | CG34105-RA | 40..510 | 9..479 | 2355 | 100 | Plus |
| CG12491-RA | 580 | CG12491-RA | 40..510 | 9..479 | 2355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:07:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23749382..23749852 | 479..9 | 2355 | 100 | Minus |
| 2R | 25286936 | 2R | 23750685..23751155 | 9..479 | 2355 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:07:08 has no hits.
UFO11666.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-12 09:41:21 Download gff for
UFO11666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34105-RA | 1..474 | 9..483 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:39:45 Download gff for
UFO11666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34105-RA | 40..513 | 9..483 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:48:37 Download gff for
UFO11666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12491-RA | 40..513 | 9..483 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:48:37 Download gff for
UFO11666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23749382..23749852 | 9..479 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:39:45 Download gff for
UFO11666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19636905..19637375 | 9..479 | 100 | | Minus |
