UFO11667.5prime Sequence
910 bp (640 high quality bases) assembled on 2012-06-12
> UFO11667.5prime
AACGATGGTGAGAGGGAGAGGGGTGGAGAACCGGCGATAGGAAGTGCGGA
TGTCTTTGGGCTCCTGCTTGGACTTGGAAGATGGAAATCTTAATCCATAC
GAATGGAAATGGAAGTCGAGAAGCACAGCCCACACGCACACAAACACATA
CACATAGAGAAGGACTTCTTGGGAACCAAGGTACTTCCGGAATGGATGGC
CCGACTCCTGACTCCTCCTGGTCCTGCCAGCTGGATCCTCCGGTCGCAAG
CTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATC
ATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCA
TGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAG
CGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCA
ACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTC
ATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATTGGAAGCCA
TCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTTGT
CGCCTTGCGTATAATATTTGCCCATGGTGAAACGGGGGCGAAAAGTTTGT
CCATATTGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGG
CTGAGACGAAAACATATTCTCAATAAACCCTTTAGGAAATAGGCAGGTTT
CACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGAAAT
CGTCGTGTATCACTCAGAGCGATGAGACGTTTCAGTTTGCTCATGGAAAC
TGTGTACCAGGTGACACTATCCTATTCACCAGCTCACGTCTTTCATGGCA
TACGAAATTC
UFO11667.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:07:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42524-RB | 1881 | CG42524-RB | 1398..1643 | 1..245 | 1190 | 99.2 | Plus |
| CG42524-RA | 1984 | CG42524-RA | 1398..1643 | 1..245 | 1190 | 99.2 | Plus |
| CG42524-RC | 2167 | CG42524-RC | 1398..1643 | 1..245 | 1190 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:07:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15637758..15637884 | 119..245 | 635 | 100 | Plus |
| 2R | 25286936 | 2R | 15630709..15630780 | 49..120 | 345 | 98.6 | Plus |
| 2R | 25286936 | 2R | 15615251..15615300 | 1..49 | 200 | 98 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:07:11 has no hits.
UFO11667.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-12 09:41:22 Download gff for
UFO11667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42524-RA | 1150..1399 | 1..249 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:39:47 Download gff for
UFO11667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42524-RC | 1398..1647 | 1..249 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:48:38 Download gff for
UFO11667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42524-RC | 1398..1647 | 1..249 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:48:38 Download gff for
UFO11667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15615251..15615300 | 1..49 | 98 | -> | Plus |
| 2R | 15630710..15630780 | 50..120 | 98 | -> | Plus |
| 2R | 15637760..15637884 | 121..245 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:39:47 Download gff for
UFO11667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11502756..11502805 | 1..49 | 98 | -> | Plus |
| arm_2R | 11518215..11518285 | 50..120 | 98 | -> | Plus |
| arm_2R | 11525265..11525389 | 121..245 | 100 | == | Plus |
