UFO11668.5prime Sequence
1085 bp (986 high quality bases) assembled on 2012-06-12
> UFO11668.5prime
CAGTCGACATGCGCGATGTGCCGAAATCTCTCGGTCTCTCGGTCACAACT
CCAGGCGGCAGTTCGGGTGCTCCGGACAGTGGTCGCCACAACAGCTTGGA
GGAGATCAATCTGGACCAGTTCCTGAAAACGTCCAACTACGAGGACACGG
TGAAGCAGCTGGACATCTACTATGGCATTGTCAAGCGTCAACTGCTGCGA
TACCAGAGTCCCATCACCGGTTTGTTTCCGGTGATGAGCACCGACCAGGT
GGTGGGATCGGTGCGGGACAGTGTGTATTGCGCATCCGCCGTGTGGAGCT
TGTACCAGGCGTACAGACGGATCGACGATGACCGCGGAAAGTCCTACGAA
CTGGGCCAGAGCACTGTGAAGTGCATGCGAGGCATTCTTGAGTGCTGGGT
CAAGCAGGCATCGCGGGTGGAGCTCTTTAAGCAGCGCCAGTCCAATCAGC
ACGCACTGCATAGCAAATTCCAGCTGCACACCGGAGAGAAGATATATCCG
GATGAGTTTTACAATCACCTACAGATAGATTGCGTTTCTCTCTATCTGTT
GTTCCTCGTCCAGATGATAACCTCTGGCCTGCAGATCATTTACACCCACG
ACGAGGTGGCCTTTGTCCAGAATCTAGTGTACTATGTGGAGCGCGCCTAT
CGTACGCCCGACTTTGGCATGTGGGAGCGGGGCTCTAAATATAACAATGG
CACCCCGGAGATCCATGCCTCCTCCATTGGCATGGCTAAGTCCGCCTTGG
AGGCCATTAACGGGTGCAATCTGTTCGGCGAGAAAGGAGCTTCATGGAGC
GTTGTCTATGTGGACATTGATGCCCACAACCGGAATCGCAGTATTTTCGA
ACCATGCTGCCCAGGGAATCAGCTCAAAGGGAGTGATGCTTCACTGCTTC
TCACCCTTTCTTCCCAGCCTTTGCCTCGCATGAGATCGCCTGGGGAGCAG
AACCAAACAAATGTGTAAATCGTTTGCGCTGCAATGGGCTTAGCGCTCAC
GGTGATGATCCCAGCAAAACGAGACATCCCGACGCTATTATCCTCTGCCA
GCTAAGAATCGAAGCTGAATGATGCCCCTTTTCTT
UFO11668.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:07:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8475-RC | 3731 | CG8475-RC | 104..1172 | 9..1055 | 4735 | 97.5 | Plus |
| CG8475-RB | 5361 | CG8475-RB | 104..1172 | 9..1055 | 4735 | 97.5 | Plus |
| CG8475-RA | 3570 | CG8475-RA | 104..1172 | 9..1055 | 4735 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:07:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8196035..8196390 | 535..180 | 1780 | 100 | Minus |
| 2L | 23513712 | 2L | 8195638..8195976 | 871..534 | 1645 | 99.7 | Minus |
| 2L | 23513712 | 2L | 8196584..8196735 | 180..29 | 760 | 100 | Minus |
| 2L | 23513712 | 2L | 8195460..8195564 | 984..884 | 265 | 92.4 | Minus |
Blast to na_te.dros performed 2014-11-28 03:07:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Uvir | 6564 | Dvir\Uvir VIRUVIR 6564bp | 1218..1268 | 774..724 | 111 | 68.6 | Minus |
UFO11668.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-12 09:41:23 Download gff for
UFO11668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8475-RB | 79..1061 | 9..984 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:39:49 Download gff for
UFO11668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8475-RA | 104..1086 | 9..984 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:48:40 Download gff for
UFO11668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8475-RA | 104..1086 | 9..984 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:48:40 Download gff for
UFO11668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8195629..8195976 | 534..879 | 99 | <- | Minus |
| 2L | 8196037..8196389 | 181..533 | 100 | <- | Minus |
| 2L | 8196584..8196735 | 29..180 | 100 | <- | Minus |
| 2L | 8196796..8196815 | 9..28 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:39:49 Download gff for
UFO11668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8195629..8195976 | 534..879 | 99 | <- | Minus |
| arm_2L | 8196037..8196389 | 181..533 | 100 | <- | Minus |
| arm_2L | 8196584..8196735 | 29..180 | 100 | <- | Minus |
| arm_2L | 8196796..8196815 | 9..28 | 100 | | Minus |
