UFO11669.5prime Sequence
1085 bp (974 high quality bases) assembled on 2012-06-12
> UFO11669.5prime
CAGTCGACATGAAGAGCCTTCTGAGTCTGTCGACAGTCCTGTTTGTCCTG
TCATTCGCGTGTGTGGTCCTGGCCAACAGCAGTAGCAGCAGTTCCACACC
CAAGTTATGTGTCCTGCGGAACTGCAACTGGAACTCCACCACGAATGCCT
GTGGCCGCTTTGGTCGCTCCAATCTGTGCAATCGCTTTAAGAACAGCTGC
ACCCTGCGATATGAATCCTGCGTGGGATCCACCACATACACGGCGGTCAG
TCTGTCCCAGTGTTCCGGGATCAGCGTGGGTTCCCGTGGAACCTGCGGAG
GATCGTCGTCGTCCTCCTCCTCGTCATCGAATGTTGTACCCATAATCATA
CGCAGGGGAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGT
AAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTA
GGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCC
CGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCAT
TACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCC
CCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCC
GACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCA
TCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGG
GCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACT
CACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAG
GGAAATAGGCCAGGTTTTCACGTACACGCCACATTTTGCGAATATATGTT
GTAAAACTGCGGAAATCGTCGTGTATTCACCTCCAGAGCGATGAAACGTT
CAGTTGCTCATGGAAACGGTGTAACAAGGTGAACACTATCCAATATCACC
CGCTCACCGTCTTTCATTGCATACGAAATTCGGAATGAAGCATTCCATCA
GGCGGCCAGATGGATAACGGCGGATAACCTGGCTT
UFO11669.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:07:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13170-RA | 415 | CG13170-RA | 11..361 | 9..359 | 1755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:07:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12240409..12240759 | 9..359 | 1755 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 03:07:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GATE | 8507 | GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). | 7878..7927 | 325..278 | 119 | 74 | Minus |
UFO11669.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-12 09:41:23 Download gff for
UFO11669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13170-RA | 1..354 | 9..362 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:39:51 Download gff for
UFO11669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13170-RA | 3..361 | 1..359 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:48:40 Download gff for
UFO11669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13170-RA | 3..361 | 1..359 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:48:40 Download gff for
UFO11669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12240401..12240759 | 1..359 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:39:51 Download gff for
UFO11669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8127906..8128264 | 1..359 | 98 | == | Plus |
