UFO11671.5prime Sequence
1100 bp (985 high quality bases) assembled on 2012-06-12
> UFO11671.5prime
CAGTCGACATGCGTTGTATGCTTATAGTATTTGCCATAGCTGCTGTAAGC
CTTTCGTGTGCTGCTCCTGCGAAATCGCAAAACGAGATGTTAGCTCATTT
CTTTGACTATGCTGACACCCTCCGTGGCATTCAAATCCATAATATGATGT
CACTCACCATCAAATTCGTGCAACAAGTTGTGGACACAGTTCCGCTTGAA
CAACGTGGACCGGGAACGGCTGCCCTCCAGGCCTATGCCAACAAGGGCAA
GAGTCTCAAACAGCGAGGCACAACTGGCGAGAAATATAACTATATCTACG
AACTGCAACAGGTATTCGAGGGACTCAACAGCGAGCTGAGTCAATCGGCA
CCTGAATCCCAGGTGATTGGAATGAGCCTGCTGGGTTTACTGGGCGTTAG
CACTGAATTCGCCAATGAGAATGAGAAACTCCACAATAAGTTTGTCGAAG
GTGCCACCCAAATGAAAGCCATGTTGTCTCCGACCACAATAGCTCGGGAA
AGTGAGCTCCTCGAGGCGATCGACAAATACATCGCTTCCACTGATATACA
GCAGCACGAAGCTCTCTTTATGAAAGTCATGAGCTTCAAGGATAGGTACG
CAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCAT
AATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTG
GTCATGACTAGTGCTTGTATTCTCACCAATAAAAAACGCCCGGCGGCAAC
CGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCT
ATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCC
ACTCATCGCAGTACTGTTGTAATTCATTAGCATTCTGCCGACATGGAAGC
CATCACAAACGGCATGATGAACCTGAATCGCAGCGGCATCAGCACTGGTC
GCTGCGTATAATATTGCCCATGGTGAAACGGGGCGAAGAGTGTCATATTG
CCACGTTAAATCAAACTGTTAACTCACCAGGATGGCTGAAACGAAAAACA
TATTCCATATAGCCTTAGGAATAGGCAAGGTTTTTCCCGTAAACAGGCCC
UFO11671.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:06:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13962-RB | 769 | CG13962-RB | 21..611 | 9..599 | 2955 | 100 | Plus |
| CG13962-RA | 651 | CG13962-RA | 21..611 | 9..599 | 2955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:06:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19813862..19814413 | 599..48 | 2760 | 100 | Minus |
| 2L | 23513712 | 2L | 19814474..19814512 | 47..9 | 195 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:06:50 has no hits.
UFO11671.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-12 09:41:17 Download gff for
UFO11671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13962-RA | 25..625 | 9..612 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:39:33 Download gff for
UFO11671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13962-RA | 21..621 | 9..612 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:48:27 Download gff for
UFO11671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13962-RA | 21..621 | 9..612 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:48:27 Download gff for
UFO11671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19813852..19814413 | 48..612 | 99 | <- | Minus |
| 2L | 19814474..19814512 | 9..47 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:39:33 Download gff for
UFO11671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19813852..19814413 | 48..612 | 99 | <- | Minus |
| arm_2L | 19814474..19814512 | 9..47 | 100 | | Minus |
