UFO11673.5prime Sequence
1064 bp (968 high quality bases) assembled on 2012-06-12
> UFO11673.5prime
CAGTCGACATGTCATTTCCTCGGATCATTTTTTTCCTTGTGTTGCTGGCA
TTTGCCAGGAGTGATCCTGTTGAAAGGAATACGGAAGCCATTTGCCAGTT
TTTCCAACACGTTCGAGCGTTTCAAGCAGACTGGTGGGAGGACTCAGTTA
TCCTGATGAAGAGAATGTTGGAGGAAATGGTCAATGCCCTAGAGCCCTAT
ATCGAATATGCAGAGTACAGGAAAACCATGCAGGACTATCTCGAGCATGG
AAAGACCATAGTTACGTCCAGTCGTTTGGAAGATAAGATGGCATTTGTTC
AAGGATTCAATGAACACGGTGACCAGCCAACTCTAGTCGGATCACCCTCC
AAGAGGCAGGCGCTCACCAGACCTCTAAACCATTTCCAATCGAATATGAT
TTCCAAAGTGTTCACTGAGTTCCATAAAAAACTGATCAAAGCTGCTGACG
ACTTGGAGCGAGTAGTGCGATTCCCGGATAACTCTGCTAGGGGGGAACTT
TTTGGGCTTCTCGAGCAATATCGGGCCAGTGGTATTGGAAGTATGACTGA
AGAGATAGCTTCTCGAATCCTGGCGCTAAAGGATAATTACCAGTGTGCCG
CAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCAT
AATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTG
GTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAAC
CGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCT
ATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCC
ACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGAAGC
CATCACAAACGGCATGATGATCTGAATCGCAGCGCATCAGCACTTGTCGC
TGCGTATAAATATTTGCCATGTGAAACGGGGCGAGAGTGTCATATGCCAC
GGTTATTCAACTGTGAAACTCACCAGGAATGGCTGAAACGAAAACCTATT
CTCATAACGTAGGA
UFO11673.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:07:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31606-RB | 690 | CG31606-RB | 20..610 | 9..599 | 2955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:07:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8147724..8148276 | 47..599 | 2765 | 100 | Plus |
| 2L | 23513712 | 2L | 8147630..8147669 | 9..48 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:07:27 has no hits.
UFO11673.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-12 09:41:25 Download gff for
UFO11673.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31606-RB | 1..594 | 9..600 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:39:58 Download gff for
UFO11673.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31606-RB | 20..610 | 9..599 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:48:44 Download gff for
UFO11673.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31606-RB | 20..610 | 9..599 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:48:44 Download gff for
UFO11673.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8147630..8147668 | 9..47 | 100 | -> | Plus |
| 2L | 8147725..8148276 | 48..599 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:39:58 Download gff for
UFO11673.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8147630..8147668 | 9..47 | 100 | -> | Plus |
| arm_2L | 8147725..8148276 | 48..599 | 100 | == | Plus |
