UFO11677.5prime Sequence
1061 bp (942 high quality bases) assembled on 2012-06-12
> UFO11677.5prime
CAGTCGACATGCCCAACGTGATCGTCAACCTGTCATTAATTTTCTTATTC
TTGGGTGGTATTTTCCATCTCAATGAAGCCCAGACAACGGATTGTTCGAA
TTCGTGTATTTTTCGAGCAAGATGCACTCCCTACTACAAGGATTTGGTCT
GGTCAGTGGTGGACCGCGTTTGTCGGGTCTTTCAAAACGGTTGCATCTTT
GCCAATGAAAATTGCATGAGAGCCAATCGCTGCTTGCCACCCATGGTAGC
CACCACAAAGGAAGAGTGTACGAAGGAGATCTACTGTCCAAGGTGGTGTT
CCCGAGGAGCTCCGCCGGTCTGCGCATGGTTTCCCTATACAGACAGTAAT
GGGAATACCGGAGGTCGAGACATGTCATTCGGAAGTCGCTGTCTACTAGA
CATGTATGCCTGCCGTAATGAACAGGCCTATGTCAACGAACCACGTATAG
GATCGTGCACAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAG
GTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCC
TAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACG
CCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTC
ATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACG
CCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTG
CCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGG
CATCAGCACCTTGTCGCCTTGCGTATATATTTGCCCATGGTGAAAACGGG
GCGAAGAGTTGTCCATATTGCCACGTTTAAATCAAACTGTGAACTCCACC
CAGGATTGCTGAGACGAAAAACATATTTCTCAATAAACCCTTTAGAATAG
CAGTTTTCACCGTACACGCCCACAATCTGCGAATATATTGTGTAGAACTG
CCGAAATCGTCTGCATTCACTCGAGCGATGAAACGTTCAGCTGCTATGAA
CGGTACAGGTG
UFO11677.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:07:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42823-RA | 508 | CG34053-RB | 4..457 | 8..461 | 2270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:07:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17404874..17405106 | 240..8 | 1165 | 100 | Minus |
| 3R | 32079331 | 3R | 17404630..17404815 | 426..241 | 930 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:07:39 has no hits.
UFO11677.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-12 09:41:28 Download gff for
UFO11677.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42823-RA | 2..460 | 7..465 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:40:07 Download gff for
UFO11677.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42823-RA | 2..460 | 7..465 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:48:50 Download gff for
UFO11677.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42823-RA | 2..460 | 7..465 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:48:50 Download gff for
UFO11677.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17404874..17405109 | 1..240 | 98 | | Minus |
| 3R | 17404630..17404815 | 241..426 | 100 | <- | Minus |
| 3R | 17404538..17404572 | 427..461 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:40:07 Download gff for
UFO11677.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13230260..13230294 | 427..461 | 100 | <- | Minus |
| arm_3R | 13230352..13230537 | 241..426 | 100 | <- | Minus |
| arm_3R | 13230596..13230831 | 1..240 | 98 | | Minus |
