UFO11679.5prime Sequence
1108 bp (992 high quality bases) assembled on 2012-06-12
> UFO11679.5prime
CAGTCGACATGGTTCGACCAACACTAGTTGCGCTGGCTAAGCGCGTACCG
CTCATACACTTCCGCAAGGGTGGTGCAGGAGTGCCGGGCGCCCAGACAGC
AAACCAGAAGGCAAGTTCCCAGGCCGCAGGAGGCAAAAAGTTGGCCGGTG
GACCAGCAATTGAGGACTACGAGCTGCCGGCACGATTTGCCCGCAAGCCA
ATTGATCCCGAAGAGGCGGCTTACATTAATAATGGGGGTATTCCAAACGC
AAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATA
ATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGG
TCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACC
GAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTA
TCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCA
CTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGC
CATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTG
TCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTT
GTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGAT
TGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCC
AGGTTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTG
CCGGAATCGTCGTGGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTG
CTCATGGAAACGGTGTAACAAGGTGAACACTATCCCATATCACCAGCTCA
CGTCTTTCATTGCCATACGAAATTCCGGATGAGCATTCATCAGCGGGCAA
AATGTGAATAAAGGCCGGATAAAACTTGTGCTTATTTTTCTTTACGTCTT
TAAAGCCGTAATATCCAGCTGACGTCTGTTATAGTCTGAGCACTGACTGA
ATGCCTCAATGTTCTTTACGATGCATTGGATATATCACGGGTGAAATCAA
GTGAATTT
UFO11679.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:07:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44242-RB | 456 | CG44242-RB | 88..327 | 9..248 | 1200 | 100 | Plus |
| CG44242-RA | 426 | CG44242-RA | 187..297 | 138..248 | 555 | 100 | Plus |
| CG44242-RA | 426 | CG44242-RA | 88..189 | 9..110 | 510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:07:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16196471..16196602 | 9..140 | 660 | 100 | Plus |
| 2R | 25286936 | 2R | 16196690..16196799 | 139..248 | 550 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:07:42 has no hits.
UFO11679.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-12 09:41:29 Download gff for
UFO11679.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8446-RE | 78..330 | 1..253 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:40:10 Download gff for
UFO11679.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44242-RB | 80..332 | 1..253 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:48:52 Download gff for
UFO11679.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44242-RB | 80..332 | 1..253 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:48:52 Download gff for
UFO11679.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16196463..16196602 | 1..140 | 97 | -> | Plus |
| 2R | 16196692..16196799 | 141..248 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:40:10 Download gff for
UFO11679.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12083968..12084107 | 1..140 | 97 | -> | Plus |
| arm_2R | 12084197..12084304 | 141..248 | 100 | == | Plus |
