UFO11680.5prime Sequence
1083 bp (987 high quality bases) assembled on 2012-06-12
> UFO11680.5prime
CAGTCGAACATGTCTGCCCAAGTGGAGAGCAATGGTGCCAGTGAAAGTAA
TAACAATTGCGTCAAGGATGTCAGGCTCCTGCTGCTGCCGGAGAATTCCA
CGGATTCGGATGGCAATCCGGCGAGTGTCGCATTCAGTGCGGAATCGCAC
AAGAAATTCATTGATGACCTGACACGAACCATTGACGTGGGCCATGTGAG
GAGGAAGCGATTGTGGCGGGTGCCCTGGTTTATTTTGCTGATGAGTTTTG
TGCAGATATCTTTGCACTGGATAGCTAGTGAGTGTATGCAAAAAGTACTG
ATCTTCAAACCGGAATGGAACGTCGAGTACTGGCGCCTACTGACCTATAT
GCTGCTCCATTCCGATTACTGGCATCTGTCTCTCAACATTTGCTTTCAGT
GCTTTATAGGTATCTGCCTGGAAGTGGAGCAGGGTCACTGGCGTCTGGCC
GTGGTCTATATGGTGGGTGGCGTCGCTGGTTCGCTGGCCAATGCCTGGCT
GCAGCCCCATCTCCATCTGATGGGTGCCTCCGCTGGGGTCTACGCCATGC
TGGGAAGTCATGTGCCGCACCTGGTTCTGAACTTTTCGCAATTGTCGCAC
CGCTTTGCCCGCATCGCCTCCCTGCTGATATTGTTACTCAGCGATGTGGG
CTTTACAACTTACCACTTTTGCCACAATCACAATCGCAATCCGCGCACCA
GTCTGGAGGCGCATATTGGAGGGGGCGTGGCCGGAATTCTGTGCGGTTTC
ATCGTCTATCGACGCCTGCAGCCAGCCAATCAAAAGGCCATTTACTTTGC
AAGCTTTCTAGACCATTCGTTTGGCGCGCGGCCCAGGTAAGTGGTCATAA
TCATAATCATAATCATAATCATATCACACTAGCCTAGAGATCCTGGTCAT
GACTAGTGCTTGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCG
TTCTGAACAAATCCAGATGGAGTTCTTGAGTCATTACTTGATTTTATCAA
CAGAGTCAGCGGAGCTCCGAATTCAATTACGCCCGCCTGCCACTCATCGG
AGTACTGTGTATCATAGCATTCTGCGACTGAGC
UFO11680.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:07:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rho-6-RB | 944 | CG17212-RB | 73..861 | 10..798 | 3945 | 100 | Plus |
| rho-6-RC | 934 | CG17212-RC | 73..851 | 10..798 | 3785 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:07:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12133094..12133339 | 255..10 | 1230 | 100 | Minus |
| 2L | 23513712 | 2L | 12130599..12130818 | 798..579 | 1100 | 100 | Minus |
| 2L | 23513712 | 2L | 12130886..12131068 | 579..397 | 915 | 100 | Minus |
| 2L | 23513712 | 2L | 12131292..12131438 | 399..253 | 735 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 03:07:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy | 7469 | gypsy DMGYPF1A 7469bp Derived from M12927 (g157583) (Rel. 44, Last updated, Version 6). | 5936..5973 | 428..390 | 111 | 79.5 | Minus |
UFO11680.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-12 09:41:30 Download gff for
UFO11680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rho-6-RB | 22..817 | 4..798 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:40:12 Download gff for
UFO11680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rho-6-RB | 22..817 | 4..798 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:48:54 Download gff for
UFO11680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rho-6-RB | 66..861 | 4..798 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:48:54 Download gff for
UFO11680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12130599..12130817 | 580..798 | 100 | <- | Minus |
| 2L | 12130886..12131065 | 400..579 | 100 | <- | Minus |
| 2L | 12131292..12131435 | 256..399 | 100 | <- | Minus |
| 2L | 12133094..12133346 | 4..255 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:40:12 Download gff for
UFO11680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12131292..12131435 | 256..399 | 100 | <- | Minus |
| arm_2L | 12130599..12130817 | 580..798 | 100 | <- | Minus |
| arm_2L | 12130886..12131065 | 400..579 | 100 | <- | Minus |
| arm_2L | 12133094..12133346 | 4..255 | 98 | | Minus |
